View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2038_low_9 (Length: 444)
Name: NF2038_low_9
Description: NF2038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2038_low_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 32165392 - 32165832
Alignment:
| Q |
9 |
acatcatcatattactcagattcacacaacagctatgnnnnnnngtacagtaataataacaaatacagttaacagttaaataaataagcaaacataccac |
108 |
Q |
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| T |
32165392 |
acatcatcatattactcagattcacacaacagctatgtttttttgtacagtaataataacaaatacagttaacagttaaataaataagcaaacataccac |
32165491 |
T |
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| Q |
109 |
gtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagcccctatgaatgctgtggacacagtccatc |
208 |
Q |
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| T |
32165492 |
gtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagcccctatggatgctgtggacacagtcaatc |
32165591 |
T |
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| Q |
209 |
cacctcaataatata---taaatgaaaatcaaat--acacacacatgttttgaatctggacctctgtaccnnnnnnntattaaataatatggacccctat |
303 |
Q |
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| T |
32165592 |
cacctcaataatatatagtaaatgaaaatcaaatacacacacacatgttttgaatctggacctctgtaccaaaaaaatattaaataatatggacccctat |
32165691 |
T |
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| Q |
304 |
aattataataataggcaattgctaagaagggaaagtgtctcatgtgatataccaaggttgtttccaactgaacttgatacttcatttttaggtctatcat |
403 |
Q |
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| T |
32165692 |
aattataataataggcaattgctaagaagggaaagtgtctcatgtgatataccaaggttgtttccaactgaacttgatacttcatctttaggtctatcat |
32165791 |
T |
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| Q |
404 |
cacctctcaagatatgtattattctaaacctttcacccacc |
444 |
Q |
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| T |
32165792 |
cacctctcaagatatgtattattctaaacctttcacccacc |
32165832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 27325372 - 27325408
Alignment:
| Q |
100 |
acataccacgtagtatttgacatgtttctttgccatt |
136 |
Q |
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| T |
27325372 |
acataccacgtagtacttgacaggtttctttgccatt |
27325408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 27350428 - 27350464
Alignment:
| Q |
100 |
acataccacgtagtatttgacatgtttctttgccatt |
136 |
Q |
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| T |
27350428 |
acataccccgtagtacttgacatgtttctttgccatt |
27350464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 32169280 - 32169316
Alignment:
| Q |
100 |
acataccacgtagtatttgacatgtttctttgccatt |
136 |
Q |
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|||||||||||||||||| ||| |||||||||||||| |
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| T |
32169280 |
acataccacgtagtatttcacaggtttctttgccatt |
32169316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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