View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20390_high_3 (Length: 218)
Name: NF20390_high_3
Description: NF20390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20390_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9425911 - 9426047
Alignment:
| Q |
1 |
gaaaatgggacagtacatgtataccgtgttcaacactgtttatattcatattttaaaatgattcattcgctgtccttattctaagagactgagttaggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9425911 |
gaaaatgggacagtacatgtataccgtgttcaacactgtttatattcatattttaaaatgattcagtcgctgtccttattcta--agactgagttaggtc |
9426008 |
T |
|
| Q |
101 |
attgacatttcattccat---agaattgacgccattaag |
136 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
9426009 |
attgacatttcattccataccagaatttacgccattaag |
9426047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13598746 - 13598661
Alignment:
| Q |
1 |
gaaaatgggacagtacatgtataccgtgttcaacactgtttatattcatattttaaaatgattcattcgctgtccttattctaaga |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13598746 |
gaaaatgggacagtacatgtataccgtgttcaacactgtttatattcatattttaaaatgattcattcgctgtccttattctaaga |
13598661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 9426081 - 9426128
Alignment:
| Q |
171 |
cacgttattaaaatcgaaagtccatagtctttgaaaaactttatttta |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9426081 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttatttta |
9426128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 13598594 - 13598549
Alignment:
| Q |
171 |
cacgttattaaaatcgaaagtccatagtctttgaaaaactttattt |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13598594 |
cacgttattaaaatggaaagtccatagtctttgaaaaactttattt |
13598549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University