View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20390_low_2 (Length: 477)
Name: NF20390_low_2
Description: NF20390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20390_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 15169363 - 15169816
Alignment:
| Q |
19 |
ctgccaataaatcttcatcgaagatatgtcgagtttgtggcgatgagattggatataaggaaaatggagagctttttgtggcttgtcatgtgtgtgcatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169363 |
ctgccaataaatcttcatcgaagatatgtcgagtttgtggcgatgagattggatataaggaaaatggagagctttttgtggcttgtcatgtgtgtgcatt |
15169462 |
T |
|
| Q |
119 |
tcctgtttgtaggccttgttatgagtatgagaggagtgaagggaatcaatgttgccctcaatgcaacagtcgctataagcgccataaaggttagccttta |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169463 |
tcctgtttgtaagccttgttatgagtatgagaggagtgaagggaatcaatgttgccctcaatgcaacagtcgctataagcgccataaaggttagccttta |
15169562 |
T |
|
| Q |
219 |
gtgaaactttttgttatcatagt---aactttaatttatatgtgtagaaaagttttacacatacattcaatcagatcttactattcagatataccataat |
315 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169563 |
gtgaaactttttgttatcgtagtagtaactttaatttatatgcgtagaaaagttttacacatacattcaatcagatcttactattcagatataccataat |
15169662 |
T |
|
| Q |
316 |
gttattttctaaaatacttgcactagtaaatagtgaaatgtgattggatatagaaaacgtatttgttgaagtaactatgtcgcgcagtttttaatctcag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169663 |
gttattttctaaaatacttgcactagtaaatagtgaaatgtgattggatatagaaaacgtatttgttgaagtaactatgtcgcgcagtttttaatctcag |
15169762 |
T |
|
| Q |
416 |
ccatccaatctgattcagtatttaaaactgattttgataatgatgatgatgatg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169763 |
ccatccaatctgattcagtatttaaaactgattttgataatgatgatgatgatg |
15169816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University