View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20390_low_4 (Length: 284)

Name: NF20390_low_4
Description: NF20390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20390_low_4
NF20390_low_4
[»] chr1 (2 HSPs)
chr1 (19-151)||(6261146-6261278)
chr1 (217-274)||(6261011-6261068)
[»] scaffold0316 (1 HSPs)
scaffold0316 (235-274)||(17244-17283)
[»] chr7 (2 HSPs)
chr7 (235-274)||(12311045-12311084)
chr7 (235-274)||(2318161-2318200)
[»] chr2 (1 HSPs)
chr2 (235-274)||(3440120-3440159)
[»] chr8 (1 HSPs)
chr8 (235-274)||(15258849-15258888)
[»] chr6 (1 HSPs)
chr6 (235-274)||(31110681-31110720)
[»] chr4 (1 HSPs)
chr4 (235-274)||(50052348-50052387)
[»] chr3 (4 HSPs)
chr3 (235-274)||(26754836-26754875)
chr3 (235-274)||(48375626-48375665)
chr3 (235-269)||(26141450-26141484)
chr3 (235-269)||(41189684-41189718)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 6261278 - 6261146
Alignment:
Q  19 atgagttgttctgcgcttgttctgcatagaagagattttctagatatgtttatgagcatttttataagctctgtggcaatttctccggcgaagaaatcgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261278 atgagttgttctgcgcttgttctgcatagaagagattttctagatatgtttatgagcatttttataagctctgtggcaatttctccggcgaagaaatcgt 6261179  T
Q  119 tcagtgccatttttgaacacttcttaactacta 151  Q
    |||||||||||||||||||||||||||||||||    
T  6261178 tcagtgccatttttgaacacttcttaactacta 6261146  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 6261068 - 6261011
Alignment:
Q  217 ggactatattgcccttgcaaaatgttacatagaccccctttatttccatacacctttg 274  Q
    ||||||||||||||||| ||||||||||||| || || ||||||| ||||||||||||    
T  6261068 ggactatattgcccttggaaaatgttacatacacaccatttattttcatacacctttg 6261011  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 17283 - 17244
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  17283 aaaatgttacatagacaccctttatttccatacacctttg 17244  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 12311084 - 12311045
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  12311084 aaaatgttacatagacaccctttatttccatacacctttg 12311045  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 2318161 - 2318200
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  2318161 aaaatgttacatagacacactttatttccatacacctttg 2318200  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 3440159 - 3440120
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3440159 aaaatgttacatagacaccctttatttccatacacctttg 3440120  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 15258849 - 15258888
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  15258849 aaaatgttacatagacaccctttatttccatacacttttg 15258888  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 31110681 - 31110720
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  31110681 aaaatgttacatagacatcctttatttccatacacctttg 31110720  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 50052348 - 50052387
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  50052348 aaaatgttacatagacaccctttattcccatacacctttg 50052387  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 26754875 - 26754836
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  26754875 aaaatgttacatagacactctttatttccatacacctttg 26754836  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 48375626 - 48375665
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacacctttg 274  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  48375626 aaaatgttacatagacaccctttatttccatacatctttg 48375665  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 26141450 - 26141484
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacac 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  26141450 aaaatgttacatagacaccctttatttccatacac 26141484  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 41189684 - 41189718
Alignment:
Q  235 aaaatgttacatagaccccctttatttccatacac 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  41189684 aaaatgttacatagacaccctttatttccatacac 41189718  T

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