View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20391_low_2 (Length: 362)
Name: NF20391_low_2
Description: NF20391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20391_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 9016304 - 9016637
Alignment:
| Q |
18 |
ctaatatcaggtgcttcaccaaatctctttccaaaacaagtgaaagaactagatacaggaacacccacattctgatcacacggtgaagcatttacgaaac |
117 |
Q |
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| T |
9016304 |
ctaatatcaggtgcttcaccaaatctctttccaaaacaagtgaaagaactagatgcaggaacacccacattctgatcacacggtgaagcatttacgaaac |
9016403 |
T |
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| Q |
118 |
aaggagaaacattggatacaccaatgttatgttgttgctgttgaagtagtaactgagaattattatgcttgttgtgtctgataagaggatcatagagaaa |
217 |
Q |
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| T |
9016404 |
aaggagaaacattcgatacaccaatgttatgttgttgctgttgaagtagtaactgagaattattatgcttgttgtgtctgataagagggtcatagagaaa |
9016503 |
T |
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| Q |
218 |
atcaggacgagagttcaaactaagagcagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaagcattattgttattttgatctgaagca |
317 |
Q |
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| T |
9016504 |
atcaggacgagagttcaaactaagagcagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaggcattattgttattttgatctgaagca |
9016603 |
T |
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| Q |
318 |
acagaagaagatgaattattagaagaataatcta |
351 |
Q |
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| T |
9016604 |
acagaagaagatgaattattagaagaataatcta |
9016637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 5041747 - 5041842
Alignment:
| Q |
18 |
ctaatatcaggtgcttcaccaaatctctttccaaaacaagtgaaagaactagatacaggaacacccacattctgatcacacggtgaagcatttacg |
113 |
Q |
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| T |
5041747 |
ctaatatcaggttcttcaccaaatttcttaccaaaacaagtgaaagaattagatgcagcaacacccacactctgatcatatggtgaaggatttacg |
5041842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 5041928 - 5042033
Alignment:
| Q |
244 |
cagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaagcattattgttattttgatctgaagcaacagaagaagatgaattattagaaga |
343 |
Q |
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|||||||||||||| || |||||| || |||||||| |||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
5041928 |
cagtgacaagaggtaatgtggtcgttgaagtagggcaaaaaaaggaagcattattgttattttgatatgaagcaatgaaggaagatgaattattagaaga |
5042027 |
T |
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| Q |
344 |
ataatc |
349 |
Q |
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|||||| |
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| T |
5042028 |
ataatc |
5042033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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