View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20391_low_3 (Length: 322)
Name: NF20391_low_3
Description: NF20391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20391_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 20274785 - 20274471
Alignment:
| Q |
1 |
taaaatagaagagacgagctctaaaacgagtgagtgaaagagagatc------agatgactaactctattccactcaatttcagta-----cccaaagtt |
89 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20274785 |
taaaatagaagagacgagctcaaaaacgaatgagtgaaagagagatcgagatcagatgactaactctattccactcaatttcagtaatgtacccaaagtt |
20274686 |
T |
|
| Q |
90 |
cagaaacagggtgcaagtgtggtgctgacaacttattcttccaaggaaaccaaacattttagagacgagaagatgattttgaagactttggctctttact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20274685 |
cagaaacagggtgcaagtgtggtgctgacaacttattcttccaaggaaaccaaacattttagagacgagaagatgattttgaagacttttgctctttact |
20274586 |
T |
|
| Q |
190 |
atagtcatacacgccaatacctcgttttcttccaagtctgccagcatcaacatactgtacaagtagagggcaaggtgaatatttattgtccccaaggcca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20274585 |
atagtcatacacgccaatacctcgttttcttccaagtctgccagcatcaacatactgtacaagtagagggcaaggtgaatatttattgtccccaaggcca |
20274486 |
T |
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| Q |
290 |
gcatgaagaactttc |
304 |
Q |
| |
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||||||||||||||| |
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| T |
20274485 |
gcatgaagaactttc |
20274471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 21061413 - 21061099
Alignment:
| Q |
1 |
taaaatagaagagacgagctctaaaacgagtgagtgaaagagagatc------agatgactaactctattccactcaatttcagta-----cccaaagtt |
89 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21061413 |
taaaatagaagagacgagctcaaaaacgaatgagtgaaagagagatcgagatcagatgactaactctattccactcaatttcagtaatgtacccaaagtt |
21061314 |
T |
|
| Q |
90 |
cagaaacagggtgcaagtgtggtgctgacaacttattcttccaaggaaaccaaacattttagagacgagaagatgattttgaagactttggctctttact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21061313 |
cagaaacagggtgcaagtgtggtgctgacaacttattcttccaaggaaaccaaacattttagagacgagaagatgattttgaagacttttgctctttact |
21061214 |
T |
|
| Q |
190 |
atagtcatacacgccaatacctcgttttcttccaagtctgccagcatcaacatactgtacaagtagagggcaaggtgaatatttattgtccccaaggcca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21061213 |
atagtcatacacgccaatacctcgttttcttccaagtctgccagcatcaacatactgtacaagtagagggcaaggtgaatatttattgtccccaaggcca |
21061114 |
T |
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| Q |
290 |
gcatgaagaactttc |
304 |
Q |
| |
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||||||||||||||| |
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| T |
21061113 |
gcatgaagaactttc |
21061099 |
T |
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