View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_11 (Length: 401)
Name: NF20392_high_11
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 56097588 - 56097233
Alignment:
| Q |
18 |
cacgacacttgtttcattccaaaatatacaatcacaattcacaacccatttaggccatcatcttctttttcaaggtttccgttaccttcctttacttgca |
117 |
Q |
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| T |
56097588 |
cacgacacttgttccattccaaaatatacaatcacaattcacaacccatttacgccatcatcttctttttcatggtttccgttaccttcctttacttgca |
56097489 |
T |
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| Q |
118 |
caacaaaacaaaggtggctggattgatcgatggtgatatggtagatcacttggacgaaagaaaatacagagaaataaatcttgtttaaacagagaaaaca |
217 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
56097488 |
caacaaaacaaaggtggctggagtgatcgatggtggtatggtagatcacttggacgaaagaaaatacagataaataaatcttgtttaaacagagaaaaca |
56097389 |
T |
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| Q |
218 |
agaattcagaccagatactaaatatcaacaaattgatcattcgactaaattaaagatgtctcaacaaaatattatatagtttgaatagtagtatataaga |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
56097388 |
agaattcagaccagatacaaaatatcaacaaattgatcattcgactaaattaaagatgtctcaacaaaatatta-------------------tataaga |
56097308 |
T |
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| Q |
318 |
gagatgaatatcatgcatgcatctgtcactaccatacacgcacactgaaatatattatataccttaaagtataat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56097307 |
gagatgaatatcatgcatgcatctgtcactaccatacacgcacactgaaatatattatataccttaaagtataat |
56097233 |
T |
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