View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_20 (Length: 317)
Name: NF20392_high_20
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30901249 - 30901554
Alignment:
| Q |
1 |
cagggaagttagttatgtttttctgtgttctctttgttttgctcctatatgtagtaaagaagaataagaatgttgtctcaatttattttctgtataataa |
100 |
Q |
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| T |
30901249 |
cagggaagttagttatgtttttctgcgttctctatgttttgctcctatatgtagtatagaagaataagaatgttgtctcaatttattttctgtataataa |
30901348 |
T |
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| Q |
101 |
ttagatagatttgaatggtcaaccctttaaagaaatattgatatttgagaccattggagcaaaggagtaaaatttactgaaccaaattttatttatactt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901349 |
ttatatagatttgaatggtcaaccctttaaagaaatattgatatttgagaccattggagcaaaggagtaaaatttactgaaccaaattttatttatactt |
30901448 |
T |
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| Q |
201 |
caatttacttatcattacatccatccgtttagtttttagtagaaatggaaatgaaatgaacaaaaccagatttaattcacataatcatcaatgtgtggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901449 |
caatttacttatcattacatccatccgtttagtttttattagaaatggaaatgaaatgaacaaaaccagatttaattcacataatcatcaatgtgtggca |
30901548 |
T |
|
| Q |
301 |
cttcat |
306 |
Q |
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|||||| |
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| T |
30901549 |
cttcat |
30901554 |
T |
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