View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_26 (Length: 285)
Name: NF20392_high_26
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_26 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 44118 - 43876
Alignment:
| Q |
10 |
agattatactgtcttttggtttccttttt-gtttgtttgttcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttac |
108 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44118 |
agattctactgtcttttggtttccttttttgtttgtttgttcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttac |
44019 |
T |
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| Q |
109 |
aagtaattgttttacacttcgttgatgccaatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcataccacaaagcccttgattattt |
208 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44018 |
aagtaattgttttacacttcgatgatgccaatttg--------------------aaatgacaagtttaagttgtcataccacaaagcccttgattattt |
43939 |
T |
|
| Q |
209 |
gtttgagtaattgctttgagatcataactattaggctgtgtagttgttagtgtcatatttgat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43938 |
gtttgagtaattgctttgagatcataactattaggctgtgtagttgttagtgtcatatttgat |
43876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 43603 - 43554
Alignment:
| Q |
51 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
100 |
Q |
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| T |
43603 |
ttgtagatgatcttaggtgtgcctctttaatgattttaatggtgtttttt |
43554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 132 - 271
Target Start/End: Complemental strand, 27259167 - 27259028
Alignment:
| Q |
132 |
gatgccaatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcataccacaaagcccttgattatttgtttgagtaattgctttgagatc |
231 |
Q |
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| T |
27259167 |
gatgccaatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcataccacaaagcccttgattatttgtttgagtaattgctttgagatc |
27259068 |
T |
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| Q |
232 |
ataactattaggctgtgtagttgttagtgtcatatttgat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27259067 |
ataactattaggctgtgtagttgttagtgtcatatttgat |
27259028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 27259316 - 27259190
Alignment:
| Q |
10 |
agattatactgtcttttggtttccttttt-gtttgtttgttcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttac |
108 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
27259316 |
agattctactgtcttttggtttccttttttgtttgtttgttgttgtagatgatcttatatgtgcctctatattgattttaatggtgttttttcatattac |
27259217 |
T |
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| Q |
109 |
aagtaattgttttacacttcgttgatg |
135 |
Q |
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| T |
27259216 |
aagtaattgttttacacttcgttgatg |
27259190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 2684844 - 2684745
Alignment:
| Q |
137 |
caatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcatac-cacaaagcccttgattatttgtttgagtaattgctttgagatcataa |
235 |
Q |
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|||||||| |||||||||||||| |||| ||| |||||||||||| | || | ||||||||| |||||||| ||||||||| |||| ||| |||||||| |
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| T |
2684844 |
caatttgagattaatttatgcaacttgatatggcaagtttaagtttttatccgcacaaagcctttgattatgtgtttgagtttttgccttgtgatcataa |
2684745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 2682075 - 2682026
Alignment:
| Q |
51 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
100 |
Q |
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| T |
2682075 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
2682026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 46004972 - 46005107
Alignment:
| Q |
137 |
caatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcatacc-acaaagcccttgattatttgtttgagtaattgctttgagatc---- |
231 |
Q |
| |
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|||||||| |||||||||||||| |||| || |||||||||||| | || || |||||||| |||||||||||||||||| |||| ||| |||| |
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| T |
46004972 |
caatttgagattaatttatgcaacttgatatagcaagtttaagtttttatccccacaaagcctttgattatttgtttgagtttttgccttgtgatcataa |
46005071 |
T |
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| Q |
232 |
ataactattaggctgtgtagttgttagtgtcatatt |
267 |
Q |
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|||||||||| | |||||||| ||||||||||||| |
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| T |
46005072 |
ataactattatgttgtgtagtcattagtgtcatatt |
46005107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 5478468 - 5478567
Alignment:
| Q |
137 |
caatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcatac-cacaaagcccttgattatttgtttgagtaattgctttgagatcataa |
235 |
Q |
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|||||||| |||||||||||||| |||| ||| |||||||||||| | || | ||||||||| |||||||| ||||||||| |||| ||| |||||||| |
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| T |
5478468 |
caatttgagattaatttatgcaacttgatatggcaagtttaagtttttatccgcacaaagcctttgattatgtgtttgagtttttgccttgtgatcataa |
5478567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 5481236 - 5481285
Alignment:
| Q |
51 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
100 |
Q |
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|||||||||||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
5481236 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
5481285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 45008269 - 45008170
Alignment:
| Q |
137 |
caatttgaaattaatttatgcaatttgaaatgacaagtttaagttgtcatac-cacaaagcccttgattatttgtttgagtaattgctttgagatcataa |
235 |
Q |
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|||||||| |||||||||||||| |||| ||| |||||||||||| | || | ||||||||| |||||||| ||||||||| |||| ||| |||||||| |
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| T |
45008269 |
caatttgagattaatttatgcaacttgatatggcaagtttaagtttttatccgcacaaagcctttgattatgtgtttgagtttttgccttgtgatcataa |
45008170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 45005501 - 45005452
Alignment:
| Q |
51 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
100 |
Q |
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|||||||||||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
45005501 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
45005452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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