View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_28 (Length: 268)
Name: NF20392_high_28
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 54618500 - 54618767
Alignment:
| Q |
1 |
ttaactccattctcctttcttttacacattcaaattagatatacatatgttaaaatgcaaaacacagatcgatatttattaacacaatctttgtgtagct |
100 |
Q |
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| T |
54618500 |
ttaacttcattctcatttcttttacacattcaaattagatatacatatgttaaaatgcaaaacacagatcgatatttattaacacaatctttgtgtagct |
54618599 |
T |
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| Q |
101 |
taactagtaagttataatcgattaacaaacatatggtggacataagtggtagatgtttcagtcccttaataatttagtttaaggttcgattcccgaccga |
200 |
Q |
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| T |
54618600 |
taactagtaagttataatcgattaacaaacatatggtggacataagtggtagatgtttcagtcccttaataatttagtttaaggtttgattcccgaccga |
54618699 |
T |
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| Q |
201 |
tgcgtataaaaaacataaattatattcttaaatgggtctcaattatctcgaagaattaatcttcacaa |
268 |
Q |
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| T |
54618700 |
tgcgtataaaaaacataaattatatccttaaatggatctcaattatctcgaagaattaatcttcacaa |
54618767 |
T |
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