View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_high_3 (Length: 459)
Name: NF20392_high_3
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 42393762 - 42393318
Alignment:
| Q |
1 |
aagaacttaataccattgagtttgtatgaacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
42393762 |
aagaacttaataccattgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatga |
42393663 |
T |
|
| Q |
101 |
acaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393662 |
acaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctactt |
42393563 |
T |
|
| Q |
201 |
gcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393562 |
gcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaatt |
42393463 |
T |
|
| Q |
301 |
ccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393462 |
ccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatg |
42393363 |
T |
|
| Q |
401 |
gtaaatgggattataaagggaatgactttaattatttcccctttg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42393362 |
gtaaatgggattataaagggaatgacttcaattatttcccctttg |
42393318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 445
Target Start/End: Complemental strand, 42377182 - 42376766
Alignment:
| Q |
29 |
aacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttca |
128 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
129 |
agaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
228 |
Q |
| |
|
|||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
|
| Q |
229 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
328 |
Q |
| |
|
|| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||| |
|
|
| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
|
| Q |
329 |
tttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
428 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
|
| Q |
429 |
taattatttcccctttg |
445 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
42376782 |
caactatttcccttttg |
42376766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
| Q |
20 |
gtttgtatgaacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgag |
119 |
Q |
| |
|
|||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||| ||| |||| |||| ||||||||| |
|
|
| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
|
| Q |
120 |
gaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
219 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
|
| Q |
220 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| | |
|
|
| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
|
| Q |
320 |
ttgtgaacgtttg |
332 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 42387220 - 42387162
Alignment:
| Q |
387 |
aaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttg |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| |
|
|
| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttg |
42387162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University