View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_high_36 (Length: 237)
Name: NF20392_high_36
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_36 |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0247 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 22041 - 21832
Alignment:
| Q |
14 |
cacaaacaatatttgatctgacctttgaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22041 |
cacaaacaatatttgatctgacctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccct |
21942 |
T |
|
| Q |
114 |
gttgatgtagggatttaaataatttacccacctcaatctacaacttttacgacatctattcaatcctgacaagtacatgcaacaaatattttcaaaattc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
21941 |
gttgatgtagggatttaaataatttacccacctcaatctacaactttttcgacatctattcaatcctgtcaagtacatgtaacaaatattttgaaaattc |
21842 |
T |
|
| Q |
214 |
ttgttcagtt |
223 |
Q |
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|||||||||| |
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| T |
21841 |
ttgttcagtt |
21832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 24444 - 24289
Alignment:
| Q |
26 |
ttgatctgacctttgaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtaggg |
125 |
Q |
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||||| || |||| || ||||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||||||| | ||||| ||||||||| || |
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| T |
24444 |
ttgatttggccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagg |
24345 |
T |
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| Q |
126 |
atttaaataatttacccacctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
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||||||||||||||||| || |||||||||||||| ||||| ||||||||||||| |
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| T |
24344 |
gtttaaataatttacccatcttaatctacaactttttcgacacctattcaatcctg |
24289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 33867057 - 33867200
Alignment:
| Q |
64 |
ttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataatttacccacctcaatctacaacttttac |
163 |
Q |
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||||||||||||| ||||| |||||||||||||| ||||||| |||| | |||||| ||| ||||||||||||| ||||||||||||||||||||| | |
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| T |
33867057 |
ttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacctcaatctacaacttttcc |
33867156 |
T |
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| Q |
164 |
gacatctattcaatcctgacaagtacatgcaacaaatattttca |
207 |
Q |
| |
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| || ||||||||||||| |||||||||| ||||| |||||||| |
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| T |
33867157 |
ggcacctattcaatcctgccaagtacatgtaacaagtattttca |
33867200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 33734535 - 33734682
Alignment:
| Q |
40 |
gaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataattta |
139 |
Q |
| |
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|||||||||||||| ||||| || |||||||||||||| |||| |||||||||||||| || ||| | |||| ||||||| || ||||||||||| |
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| T |
33734535 |
gaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattta |
33734634 |
T |
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| Q |
140 |
cccacctcaatctacaacttttacgacatctattcaatcctgacaagt |
187 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
33734635 |
cccacctcaatctacaactttttcgacatctattcaatcctgccaagt |
33734682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 33763365 - 33763512
Alignment:
| Q |
40 |
gaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataattta |
139 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| |||| |||||||||||||| || ||| | |||| ||||||| ||| |||||||||||| |
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| T |
33763365 |
gaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattta |
33763464 |
T |
|
| Q |
140 |
cccacctcaatctacaacttttacgacatctattcaatcctgacaagt |
187 |
Q |
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||||||||||||||||||||| || |||||| ||||||||| ||||| |
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| T |
33763465 |
accacctcaatctacaactttttcggcatctactcaatcctgccaagt |
33763512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 33904589 - 33904735
Alignment:
| Q |
35 |
cctttgaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaata |
134 |
Q |
| |
|
|||| |||| ||||||||| ||||| || |||||||||||||| |||| |||||||||||||| || ||| | |||| ||||||| ||| ||||||| |
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| T |
33904589 |
ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttgggggttaaata |
33904688 |
T |
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| Q |
135 |
atttacccacctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
| |
|
||||| ||||||||||||||| ||||| || || ||||||||||||| |
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| T |
33904689 |
atttaaccacctcaatctacagctttttcggcacctattcaatcctg |
33904735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 33821889 - 33821949
Alignment:
| Q |
127 |
tttaaataatttacccacctcaatctacaacttttacgacatctattcaatcctgacaagt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
33821889 |
tttaaataatttacccacctcaatctacaactttttcgacatctattcaatcctgccaagt |
33821949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 33749007 - 33749155
Alignment:
| Q |
40 |
gaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataattta |
139 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| || |||| |||| ||||||||| |||||| | || | ||||||| || ||||||||||||| |
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| T |
33749007 |
gaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataattta |
33749106 |
T |
|
| Q |
140 |
cccacctcaatctacaacttttacgacatctattcaatcctgacaagta |
188 |
Q |
| |
|
||| ||||||||||||||||| | || ||||||| ||||| |||||| |
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| T |
33749107 |
accatctcaatctacaactttttctgcacctattcagtcctgccaagta |
33749155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 33698697 - 33698836
Alignment:
| Q |
42 |
agcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataatttacc |
141 |
Q |
| |
|
||||||| | || ||||| || ||||||||||||||||||| ||||| |||||||| | ||| | || | |||||| ||| ||||||||||| | | |
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| T |
33698697 |
agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaac |
33698796 |
T |
|
| Q |
142 |
cacctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||| |
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| T |
33698797 |
cacctcaatctacaacttttccgacacctattcaaacctg |
33698836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 33680186 - 33680240
Alignment:
| Q |
127 |
tttaaataatttacccacctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |
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|
| T |
33680186 |
tttaaataattcacccacctcaatctacaacttttccggcatctattcaaacctg |
33680240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 33846606 - 33846666
Alignment:
| Q |
44 |
cttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaa |
104 |
Q |
| |
|
|||||||||| || | ||||||||||||||| || |||| |||| ||||||||| |||||| |
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|
| T |
33846606 |
cttacctatttcccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaa |
33846666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 5470270 - 5470129
Alignment:
| Q |
40 |
gaagcttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataattta |
139 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||||| | | | ||||||| ||| ||||||||||||| |
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|
| T |
5470270 |
gaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataattta |
5470171 |
T |
|
| Q |
140 |
cccacctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5470170 |
tccacctcaatctacaactttttcgacatctattcaatcctg |
5470129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 21306041 - 21306177
Alignment:
| Q |
45 |
ttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataatttacccac |
144 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| |||||||| ||||||||| |||||| | | | |||||||| ||| |||| ||||||| |||| |
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|
| T |
21306041 |
ttacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaaccac |
21306140 |
T |
|
| Q |
145 |
ctcaatctacaacttttacgacatctattcaatcctg |
181 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |
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|
| T |
21306141 |
ctcaatctacaactttttctgcatctattcaatcctg |
21306177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 149000 - 149132
Alignment:
| Q |
45 |
ttacctattgcctaggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataatttacccac |
144 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| |||| ||| |||||||||| || ||| | |||| ||||||| ||| |||||||||||| |||| |
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|
| T |
149000 |
ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac |
149099 |
T |
|
| Q |
145 |
ctcaatctacaacttttacgacatctattcaat |
177 |
Q |
| |
|
||||||||||| ||||| || || ||||||||| |
|
|
| T |
149100 |
ctcaatctacagcttttgcggcacctattcaat |
149132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 90195 - 90050
Alignment:
| Q |
57 |
taggaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctcccggttgatgtagggatttaaataatttacccacctcaatctacaa |
156 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||||||||| |||||| | || ||||||| || |||||||| || | |||||| ||||||||| |
|
|
| T |
90195 |
taggagtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaa |
90096 |
T |
|
| Q |
157 |
cttttacgacatctattcaatcctgacaagtacatgcaacaaatat |
202 |
Q |
| |
|
||||| ||||| ||||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
90095 |
ctttttcgacacctatttaatcctgtcaaatacatataacaaatat |
90050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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