View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_39 (Length: 227)
Name: NF20392_high_39
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 27148621 - 27148840
Alignment:
| Q |
7 |
gtcgaatccatagcagctatgaacggccacgggcacaccattgaaatgaatcaaagagacttcgccgaaaaatgaacctcgtcaattgtaatagtttcaa |
106 |
Q |
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| T |
27148621 |
gtcgaatccatagcagctatgaacggccacaggcacaccattgaaatgaatcaaagagacttcgccgaaaaatgaacctcgtcaattgcaatagttccaa |
27148720 |
T |
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| Q |
107 |
agagtgtggaaac---ggagaagagaattatcagctctggagggtaaagatgatgaatcaaccaccgtagaagggtgtgaaacggcaatgaaaactaaag |
203 |
Q |
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| T |
27148721 |
agagtgtggaaacggaggagaagagaattaccagctctggagggtagagatgatgaatcagccaccgtagaagggtgtgaaatgaccatgaaaactgaag |
27148820 |
T |
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| Q |
204 |
gaaagaggtgattggagcaa |
223 |
Q |
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|||||||||||| ||||||| |
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| T |
27148821 |
gaaagaggtgatcggagcaa |
27148840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 15486120 - 15486341
Alignment:
| Q |
7 |
gtcgaatccatagcagctatgaacggccacgggcacaccattgaaatgaatcaaagagacttcgccgaaaaatgaacctcgtcaattgtaatagtttcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
15486120 |
gtcgaatccatagcagctatgaacggccacggacacaccattgaaatgaatcaaagagacttcgccgaaaaatgaacctcgtgaattgtaacagttccaa |
15486219 |
T |
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| Q |
107 |
agagtgtggaaac---ggagaagagaattatcagctctggagggtaaagatgatgaatcaaccaccgtagaagggtgtgaaacggcaatgaaaactaaag |
203 |
Q |
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| T |
15486220 |
agagtgtggaaacggaggagaagagaagaatcagctctggagggtagagatgatgaatcagtcaccgtagaagggtgtgaaatggccgtgaaaactgaag |
15486319 |
T |
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| Q |
204 |
gaaagaggtgattggagcaacg |
225 |
Q |
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|||||||||||| |||||||| |
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| T |
15486320 |
gaaagaggtgatcagagcaacg |
15486341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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