View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_high_40 (Length: 223)
Name: NF20392_high_40
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11662971 - 11663185
Alignment:
| Q |
1 |
tagagaaagaagtgggagaagaagaagggtttgtagggttgggtttgaaactggaagagatagcatcggtttcagcttcaataacgctgttgaggaaatc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11662971 |
tagagaaagaagtggaagaagaagaagggtttgtagggtggggtttgaaactggaagagatagcatcggtttcagcttcaataacgctgttgaggaaatc |
11663070 |
T |
|
| Q |
101 |
ttcgtcccattcatcgcctaagatatcatcggtgatgttga---tgttgttgtcgttcatcatcatcgatgttcttcgtcgaccttggattcgacaactt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11663071 |
ttcgtcccattcatcgcctaagatatcatcggtgatgttgatgttgttgttgttgttcatcatcatcgatgttcttcgtcgaccttggattcgactactt |
11663170 |
T |
|
| Q |
198 |
aggttttcttctctg |
212 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11663171 |
aggttttcttctctg |
11663185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University