View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_5 (Length: 455)
Name: NF20392_high_5
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 30901262 - 30900823
Alignment:
| Q |
1 |
aactaacttccctgtaaatctcagtgcttttgaaagggattgagactaatctggataagtgactatctttactttaactcaaaattcaatatatggaaat |
100 |
Q |
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| T |
30901262 |
aactaacttccctgtaaatctcagtgcttttgaaagggattgagaataatctggataagtgactatctttactttaactcaaaattcaatatatggaaat |
30901163 |
T |
|
| Q |
101 |
tggataggcataatcatcatcataactagcaagtacacatgtccacaaccacaagcaatgcagcaatcaataaatcattccatattaattccaacaaaac |
200 |
Q |
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| T |
30901162 |
tggataggcataatcatcatcataactagcaagtacacatgtccacaaccacaagcaatgcagcaatcaattaatcattccatattaattccaacaaaac |
30901063 |
T |
|
| Q |
201 |
aaaaccaattcaaaagatacccagatggaaaattagtgaattttacaaacaaacnnnnnnnnnnnnnnnnncctttgaaggagaaggttgttcaggtgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30901062 |
aaaaccaattcaaaagatacccagatggaaaattagtgaattttacaaacaaac-aaaaaaaaagtaaaaacctttgaaggagaaggttgttcaggtgga |
30900964 |
T |
|
| Q |
301 |
tgaatcatcctttcaaaatgaggaacaaaatctttgttccacaaataatcatcagaagctaaaggatcagggtcttcaccaccccaatacttacgaagct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30900963 |
tgaatcatcctttcaaaatgaggaacaaaatctttgttccacaaataatcatcagaagctaaagggtcagggtcttcaccaccccaatacttacgaagct |
30900864 |
T |
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| Q |
401 |
tggtggttgttggaggaccaccgtagtcaccaggagccata |
441 |
Q |
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| T |
30900863 |
tggtggttgttggaggaccaccgtagtcaccaggagccata |
30900823 |
T |
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