View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_high_6 (Length: 441)
Name: NF20392_high_6
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 140 - 428
Target Start/End: Original strand, 50752781 - 50753068
Alignment:
| Q |
140 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnnntggaaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgt-caaaaaaatggaaa |
50752879 |
T |
|
| Q |
240 |
atctctccgctcaaaccttgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttccttcatctatatattctcta |
339 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50752880 |
atctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctcta |
50752979 |
T |
|
| Q |
340 |
tccagtacccttattctcacactctcatacattcacgttcttcgcatttattagtctctctcatcacatttcactctctatttcatctc |
428 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50752980 |
tccagtacccttattctcacactctcatatattcaccttcttcgcatttattagtctctctcatcacatttcactctctatttcctctc |
50753068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 50752114 - 50752235
Alignment:
| Q |
20 |
gaaatgtgtttgtttcatgatgaaccttttacttctgaaaatagtttaaaacatacaaatattaaaaatagttgtgatggatacggatgtacacgaagtc |
119 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
50752114 |
gaaatgtgtttgtttc-tgatcaaccttttacttttgaaaatagtttaaaacatacaaatattaaaaatagttgtgatggatacggatgaacatgaagtc |
50752212 |
T |
|
| Q |
120 |
gaactaaaaagtgagtggccttt |
142 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
50752213 |
gaactagaaagtgagtggccttt |
50752235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University