View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_high_7 (Length: 434)
Name: NF20392_high_7
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 13824265 - 13824679
Alignment:
| Q |
1 |
aggtttattgtgcctaacacggaattcaacattctcccaagcttacagatggcttgccaacatgtgtgtttgaattggttatttcaaagaccaccaataa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13824265 |
aggtttattgtgcctaacacggaattcaacattatcccaagcttacagatgacttgccaacatgtgtgtttgaattggttatttcaaagaccaccaataa |
13824364 |
T |
|
| Q |
101 |
tcaaaatgagcgaacaccaacaacaatcttttccagagatggatgcaattaaagactgttgatcttttattactcttaatcattgaccgcatgtggaagg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
13824365 |
tcaaaacgagcgaacaccaacaacaatcttttctagagatggatgcaattaaagactgtagatcttttatcactcttaatcattgaccacatgtggaagg |
13824464 |
T |
|
| Q |
201 |
attcaatttgattattaggattaagagtttggtttgttagttcacttttggcttctgaaatttttatatgtattggtagcatgtttttggctttaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13824465 |
attcaatttgattattaggattaagagtttggtttgttagttca-ttttggcttctgaaatttttatatgtattggtagcatgtttttggctttaagaat |
13824563 |
T |
|
| Q |
301 |
gttgttgggggcatgtcccaactcatatccaatttgactgtactctcgttattttaacattttaattaattagtttgttttatcgtaaagaaaaaattca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13824564 |
gttgttgggggcatgtcccaactcatatccaatttgattgtactctcgttattttagcattttaatta---agtttgttttatcgtaaagaaaaaattca |
13824660 |
T |
|
| Q |
401 |
aaatcttaaactatatttt |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
13824661 |
aaatcttaaactatatttt |
13824679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 34688821 - 34688957
Alignment:
| Q |
213 |
tattaggattaagagtttggtttgttagttcacttttggcttctgaaatttttatatgtattggtagcatgtttttggctttaagaacgttgttgggggc |
312 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||| ||||| | ||||||||||||||||||| |||||| | || | ||| ||| |
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|
| T |
34688821 |
tattaggattaagagtttggtttgttaatgaacttttggtttcttaaatt----tgtgtattggtagcatgttttcggctttcaaaatg-tgtatgggaa |
34688915 |
T |
|
| Q |
313 |
atgtcccaactcatatccaatttgactgtactctcgttattt |
354 |
Q |
| |
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||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
34688916 |
atgtctcaactcatagccaatttgattgtactctcgttattt |
34688957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 3410983 - 3410897
Alignment:
| Q |
70 |
ttgaattggttatttcaaagaccaccaataatcaaaatgagcgaacaccaacaacaatcttttccagagatggatgcaattaaagac |
156 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||| |
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|
| T |
3410983 |
ttgaattggtcatttcaaagaccatttataatcaaaatgggcgaacaccaacaacaatttcccccaaagatggatgcaattaaagac |
3410897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 2420352 - 2420118
Alignment:
| Q |
65 |
tgtgtttgaattggttatttcaaagaccaccaataatcaaaatgagcgaacaccaacaacaatct--tttccaga-gatggatgcaattaaagactgttg |
161 |
Q |
| |
|
|||| |||||||| | ||||||||||||| ||||||||| || | ||||| || ||||||| | ||| | || ||||||||||||| |||||||| | |
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| T |
2420352 |
tgtggttgaattgatcatttcaaagaccagttataatcaaagtgtgtgaacatcatcaacaatttatttttctgacgatggatgcaattgaagactgtag |
2420253 |
T |
|
| Q |
162 |
atcttttattactcttaatcattgaccgcatgtggaaggattcaatttgattattaggattaagagtttggtttgttagttcacttttggcttctgaaat |
261 |
Q |
| |
|
|||||| |||| |||| ||||||| | ||| | ||| ||| | |||| ||||||| ||||||||||| |||| ||| | ||||||| |||||||||| |
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| T |
2420252 |
atctttcattattcttcatcattggtcatatgagaaagaatttagtttggttattagaattaagagtttagttttttaatatacttttgacttctgaaat |
2420153 |
T |
|
| Q |
262 |
ttttatatgtattggtagcatgtttttggctttaa |
296 |
Q |
| |
|
|| ||| ||||| | || ||||| ||||| ||||| |
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|
| T |
2420152 |
ttctatgtgtatcgataacatgtatttggttttaa |
2420118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 34570280 - 34570209
Alignment:
| Q |
223 |
aagagtttggtttgttagttcacttttggcttctgaaatttttatatgtattggtagcatgtttttggcttt |
294 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||||||| ||||||| || ||||| ||||||||| |
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|
| T |
34570280 |
aagagtttggtttgttaatttacttttgctttctgaaatttttatgtgtattgataacatgtatttggcttt |
34570209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 284
Target Start/End: Complemental strand, 1771172 - 1770949
Alignment:
| Q |
65 |
tgtgtttgaattggttatttcaaagaccaccaataatcaaaatgagcgaacaccaacaacaatctttt---ccagagatggatgcaattaaagactgttg |
161 |
Q |
| |
|
|||| |||||||| | ||||| |||||| | ||| ||||||||| |||| |||||||| ||| |||| || | ||||||||||||||||| || | |
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|
| T |
1771172 |
tgtggttgaattgatcatttcgaagacctcatatagtcaaaatgaccgaaaaccaacaataatttttttccccggggatggatgcaattaaagtctatga |
1771073 |
T |
|
| Q |
162 |
atcttttattactcttaatcattgaccgcatgtggaa-ggattcaatttgattattaggattaagagtttggtttgttagttcacttttggcttctgaaa |
260 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||| ||| | |||| | |||||||||||| |||| |||||| | ||||||| ||| |||| |
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| T |
1771072 |
atcttttattactctttaccattgaccatatgtggaattaatttagtttggtggttaggattaagattttgacttgttaatgtacttttgacttatgaat |
1770973 |
T |
|
| Q |
261 |
tttttatatgtattggtagcatgt |
284 |
Q |
| |
|
||||||| || |||| |||||||| |
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| T |
1770972 |
tttttatgtgcattgatagcatgt |
1770949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 9645767 - 9645584
Alignment:
| Q |
65 |
tgtgtttgaattggttatttcaaagaccaccaataatcaaaatgagcgaacaccaacaacaatctttt-----ccagagatggatgcaattaaagactgt |
159 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |||||| ||||| | |||| | |||||||| |||| ||| |||||||| |||| ||||| || |
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|
| T |
9645767 |
tgtggttgatttggtcatttcaaagaccacctataatcgaaatggacaaacatctacaacaatttttttttttccaaggatggatgtaattgaagaccgt |
9645668 |
T |
|
| Q |
160 |
tgatcttttattactcttaatcattgacc----gcatgtggaaggattcaatttgattattaggattaagagtttggtttgtta |
239 |
Q |
| |
|
|||||||| |||| |||| |||||| || | ||||||||| ||| |||||| || |||||||||| |||||||||||||| |
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|
| T |
9645667 |
tgatctttcattattcttgatcattagccatatgtatgtggaagaatttaatttggttgttaggattaaaagtttggtttgtta |
9645584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 289
Target Start/End: Complemental strand, 34452750 - 34452603
Alignment:
| Q |
142 |
gatgcaattaaagactgttgatcttttattactcttaatcattgaccgcatgtggaaggattcaatttgattattaggattaagagtttggtttgttagt |
241 |
Q |
| |
|
|||||||||||| | ||| |||||||||||| | || | ||||||| ||| | ||| ||| | |||| || ||| ||||||||||| |||||||| | |
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|
| T |
34452750 |
gatgcaattaaaaattgtggatcttttattatttttgaccattgactatatgggaaagaatttagtttgcttgatagaattaagagtttagtttgttaat |
34452651 |
T |
|
| Q |
242 |
tcacttttggcttctgaaatttttatatgtattggtagcatgtttttg |
289 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
34452650 |
gtacttttaccttcttaaatttttatatgtattgatagcatgtatttg |
34452603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 37138658 - 37138614
Alignment:
| Q |
216 |
taggattaagagtttggtttgttagttcacttttggcttctgaaa |
260 |
Q |
| |
|
||||||| |||||||||||||||| || |||||| |||||||||| |
|
|
| T |
37138658 |
taggattgagagtttggtttgttaatttactttttgcttctgaaa |
37138614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 40599596 - 40599522
Alignment:
| Q |
193 |
gtggaaggattcaatttgattattaggattaagagtttggtttgttagttcacttttggcttctgaaatttttat |
267 |
Q |
| |
|
||||||||||| |||||| | |||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
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|
| T |
40599596 |
gtggaaggatttaatttggctgataggatcaagagttcggtttgttagttcagttttggctcttgaaatttttat |
40599522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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