View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_low_10 (Length: 419)
Name: NF20392_low_10
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Complemental strand, 42744074 - 42743673
Alignment:
| Q |
4 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42744074 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
42743975 |
T |
|
| Q |
104 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42743974 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgca |
42743875 |
T |
|
| Q |
204 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743874 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
42743775 |
T |
|
| Q |
304 |
atattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagcagtat |
403 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42743774 |
atattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatagcagtat |
42743675 |
T |
|
| Q |
404 |
tt |
405 |
Q |
| |
|
|| |
|
|
| T |
42743674 |
tt |
42743673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Complemental strand, 42753433 - 42753032
Alignment:
| Q |
4 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753433 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
42753334 |
T |
|
| Q |
104 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42753333 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgca |
42753234 |
T |
|
| Q |
204 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753233 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
42753134 |
T |
|
| Q |
304 |
atattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagcagtat |
403 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42753133 |
atattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatagcagtat |
42753034 |
T |
|
| Q |
404 |
tt |
405 |
Q |
| |
|
|| |
|
|
| T |
42753033 |
tt |
42753032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 42734443 - 42734837
Alignment:
| Q |
8 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctatt |
107 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
42734443 |
ttctatatgctcctgttttgaattttaattacatccttgtaggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctatt |
42734542 |
T |
|
| Q |
108 |
agaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42734543 |
agaaacccaaatgaaacattcaatagtgcccgtgacagtgtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtg |
42734642 |
T |
|
| Q |
208 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatat |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| | | | ||| | ||||||||||| |
|
|
| T |
42734643 |
tatttggctatggaaatggaacagcaagtggtggatcgccaaaagcacgagtttccgcctataaggtttgttggg--gttcg-tgttatgatgcagatat |
42734739 |
T |
|
| Q |
308 |
tttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagcagtattt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| || | || |||||||||||||| || |||||||||||| |
|
|
| T |
42734740 |
tttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacgatagcagtattt |
42734837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 124 - 405
Target Start/End: Complemental strand, 42717326 - 42717048
Alignment:
| Q |
124 |
cattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtatttggcaatggaaa |
223 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| || |
|
|
| T |
42717326 |
catttaatagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaa |
42717227 |
T |
|
| Q |
224 |
tggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatattttggctggttttgaa |
323 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||| |
|
|
| T |
42717226 |
tggaacagcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttggga---ttcatgttatgatgcagatattttggctggttttgaa |
42717130 |
T |
|
| Q |
324 |
gctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagcagtattt |
405 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
42717129 |
gctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatagcagtattt |
42717048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 42763044 - 42762692
Alignment:
| Q |
8 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctatt |
107 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| | |||| | |
|
|
| T |
42763044 |
ttctatatgctcctattttgaatttt-attacaattttgtagaaagcttattggagcaagatatttttttaaaggctttctggca------aatccttat |
42762952 |
T |
|
| Q |
108 |
agaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtg |
207 |
Q |
| |
|
||| | ||||| | | | |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
42762951 |
agagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatggttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtg |
42762852 |
T |
|
| Q |
208 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| || |
|
|
| T |
42762851 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg---gatggatgttatgatgcagacat |
42762755 |
T |
|
| Q |
308 |
tttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtag |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
42762754 |
tttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggtag |
42762692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 281
Target Start/End: Complemental strand, 42769895 - 42769667
Alignment:
| Q |
47 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
146 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
|
|
| T |
42769895 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
42769802 |
T |
|
| Q |
147 |
gaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
246 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42769801 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
42769702 |
T |
|
| Q |
247 |
caaaagcacgagttgcagcctataaggtttgttgg |
281 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42769701 |
ctaacgcacgagttgcggcctataaggtatgttgg |
42769667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 42717406 - 42717371
Alignment:
| Q |
47 |
taggaagcttattggagcaagatattttaacaaagg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42717406 |
taggaagcttattggagcaagatatttttacaaagg |
42717371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 42769633 - 42769565
Alignment:
| Q |
300 |
gcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggt |
368 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||||||||| || ||| |||| | |||| ||||| |
|
|
| T |
42769633 |
gcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggt |
42769565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 23040409 - 23040801
Alignment:
| Q |
13 |
tatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
23040409 |
tatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcaatgccaattcctattagaga |
23040508 |
T |
|
| Q |
113 |
cccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
23040509 |
cccaaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtattt |
23040608 |
T |
|
| Q |
213 |
ggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatattttgg |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||| |
|
|
| T |
23040609 |
ggcaatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggtttgctggggggatttatgtcatgatgcagatattttgg |
23040708 |
T |
|
| Q |
313 |
ctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagcagtattt |
405 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
23040709 |
ctggttttgaagctgcaataagtgatggtgttgatgtactttcagtgtctttgggtagaaattttcctgttgaatttcacaatagcagtattt |
23040801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 358
Target Start/End: Original strand, 42313818 - 42313973
Alignment:
| Q |
203 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
302 |
Q |
| |
|
|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
|
|
| T |
42313818 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
42313917 |
T |
|
| Q |
303 |
gatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagt |
358 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
42313918 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
42313973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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