View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_11 (Length: 404)
Name: NF20392_low_11
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 37396525 - 37396158
Alignment:
| Q |
11 |
aattcaataaatcaactaacaagtttcgtacgaatatgttcaattcattttcagccataaaaataatgaatgcacgataagcatgcaacaataagcagca |
110 |
Q |
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| T |
37396525 |
aattcaataaatcaattatcaaatttcgtacaaatatgttcaattgattttcagccataaaaataatgaatgcaagataagcatgcaacaataagcagc- |
37396427 |
T |
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| Q |
111 |
gccgaaaggggtagggtaggacggaaagatcgatcgatgctgttttccacggtagattaagaacaaaataatataaacatatcaaagataaggctcacat |
210 |
Q |
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| T |
37396426 |
--cgaaaggggtagg-----acggaaagatcgatcgatgctgttttccacggtagattaagaacaaaataatataaacatatcaaagataaggctcacat |
37396334 |
T |
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| Q |
211 |
aatatcctacgagcatgcattattagcaaagtgtaattaatgtgtgcgtttgtgtgtcacaattaagtctgttgagagaaatgcctaataaaacaatcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37396333 |
aatatcctacgagcatgcattattagcaaagtgtaattaatgtgtgcgtttgtgtgtcacaattaagtctgttgagagaaatgcctaataaaacaatcca |
37396234 |
T |
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| Q |
311 |
caatatattaaaataatattttacgttgactcatgcatgttattgggccaatagcataccctacgaatctctaatt |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37396233 |
caatatattaaaataatattttacgttgactcacgcatgttattgggccaatagcataccctacgaatctctaatt |
37396158 |
T |
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