View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_12 (Length: 403)
Name: NF20392_low_12
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 6969865 - 6969609
Alignment:
| Q |
18 |
ggtctaaagctctataaagaagggtatttgtccctataattgtagggtttgaatgaacatgtggattcagattttgatcaaccaaaagggatcggtgacc |
117 |
Q |
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| T |
6969865 |
ggtctaaagctctataaagaagggtatttgtccctataattgtagggtttgaatgaacatgtggattcagattttgatcaaccaaaagggatcggtgacc |
6969766 |
T |
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| Q |
118 |
tataaaaatatctattaatacaaaagataaagggtacatcaatcccgaggaatgaactaatgtatacatatatacaaatttaaagtgaatctatctacct |
217 |
Q |
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| T |
6969765 |
tataaaaatatctattaatacaaaagataaagggtacatcaatcccgaggaatgaactaatgtatacatatatacaaatttaaagtgaatctatctacct |
6969666 |
T |
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| Q |
218 |
agctaccctctctttttgttttcagctataagaataaaagtgcaaaatcgatttctg |
274 |
Q |
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| T |
6969665 |
agctaccctctctttttgttttcagctataagaataaaagtgcaaaatcgatttctg |
6969609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 6969581 - 6969490
Alignment:
| Q |
302 |
ctactttagaaaaagaagggaatgtgattgagaaatggaatgttgttttataattcaaaaattgtttggtagaatgaagtgtattagtatta |
393 |
Q |
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| T |
6969581 |
ctactttagaaaaagaagggaatgtgattgagaaatggaatgttgttttataattcaaaaattgtttggtagaatgaagtgtattagtatta |
6969490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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