View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_15 (Length: 383)
Name: NF20392_low_15
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 50814463 - 50814100
Alignment:
| Q |
1 |
tgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtt |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50814463 |
tgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtt |
50814364 |
T |
|
| Q |
101 |
tcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814363 |
tcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagc |
50814264 |
T |
|
| Q |
201 |
gaaaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagtg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814263 |
gacaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagtg |
50814164 |
T |
|
| Q |
301 |
gtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaatggtt |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814163 |
gtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaatggtt |
50814100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 50861401 - 50861764
Alignment:
| Q |
1 |
tgagggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtt |
100 |
Q |
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| T |
50861401 |
tgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtt |
50861500 |
T |
|
| Q |
101 |
tcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861501 |
tcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagc |
50861600 |
T |
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| Q |
201 |
gaaaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagtg |
300 |
Q |
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| T |
50861601 |
gacaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagtg |
50861700 |
T |
|
| Q |
301 |
gtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaatggtt |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861701 |
gtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaatggtt |
50861764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 3 - 364
Target Start/End: Complemental strand, 39558861 - 39558498
Alignment:
| Q |
3 |
agggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc |
102 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| || | || |
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| T |
39558861 |
agggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatc |
39558762 |
T |
|
| Q |
103 |
g---ttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatag |
199 |
Q |
| |
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| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| || |||| | || | |||| | | |
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| T |
39558761 |
ggagttatacttgcagagattgatgcttaggttttcaactcctcctataattgcagcatataccaaattgtaaaagtcgtagtcgtagaagaagtagtgg |
39558662 |
T |
|
| Q |
200 |
cgaaaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagt |
299 |
Q |
| |
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| | ||||||| ||||| ||||||||||||| | ||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||| || |
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| T |
39558661 |
ctacaattaaggtggaa-gagaggatgggtaaattcttatctcgcatgctcattaaggagtagaagaattcacgaaaggcgaaatagtctggaaaggtgt |
39558563 |
T |
|
| Q |
300 |
ggtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaatggtt |
364 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
39558562 |
ggtcatcgaatcggagtatgagctgcgagaggaagagtggcttccacctctttgagaggatggtt |
39558498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 39559126 - 39558983
Alignment:
| Q |
2 |
gagggaagatcaacgaaaggtacttcgt---tcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtgg |
98 |
Q |
| |
|
||||||||||| |||||||| ||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| ||||| |
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| T |
39559126 |
gagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtgg |
39559027 |
T |
|
| Q |
99 |
tttcgttaagatggcagagatttatgcttaggttttcaactcct |
142 |
Q |
| |
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||| | ||||||||||| ||||||||||||||||||||| |
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| T |
39559026 |
ttttggatttatggcagagatcgatgcttaggttttcaactcct |
39558983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 50814734 - 50814634
Alignment:
| Q |
3 |
agggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc |
102 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| ||||||| |
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| T |
50814734 |
agggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttc |
50814635 |
T |
|
| Q |
103 |
g |
103 |
Q |
| |
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| |
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|
| T |
50814634 |
g |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 50861130 - 50861230
Alignment:
| Q |
3 |
agggaagatcaacgaaaggtacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttc |
102 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| ||||||| |
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| T |
50861130 |
agggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttc |
50861229 |
T |
|
| Q |
103 |
g |
103 |
Q |
| |
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| |
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|
| T |
50861230 |
g |
50861230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 31211027 - 31210981
Alignment:
| Q |
34 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaa |
80 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| || |||||| |
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|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaa |
31210981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 19370982 - 19371034
Alignment:
| Q |
34 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaag |
86 |
Q |
| |
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||||| |||||||||||||||| ||| |||||||||| |||||||| ||||| |
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|
| T |
19370982 |
tgttatcctcttcaatttgaggaatgccaaggttttggaagttagaaggaaag |
19371034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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