View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_16 (Length: 382)
Name: NF20392_low_16
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 580914 - 581218
Alignment:
| Q |
16 |
attattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggataaatatttatgagtttaatc |
115 |
Q |
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| T |
580914 |
attattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggataaatatttatgagtttaatc |
581013 |
T |
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| Q |
116 |
cttttgttataatataaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttga |
215 |
Q |
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| T |
581014 |
cttttgttgtaatataaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttga |
581113 |
T |
|
| Q |
216 |
cccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattaatt |
315 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
581114 |
cccatttggaggttggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgttctcaaggttcgtaattactt |
581213 |
T |
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| Q |
316 |
atatt |
320 |
Q |
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||||| |
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| T |
581214 |
atatt |
581218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 1207516 - 1207650
Alignment:
| Q |
178 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccg |
277 |
Q |
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| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaagacacct |
1207615 |
T |
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| Q |
278 |
gttctcgagacacttgttctcaaggttcgtaatta |
312 |
Q |
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| T |
1207616 |
gttctcaagacactcgttcttaaggtttgtaatta |
1207650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 1201351 - 1201469
Alignment:
| Q |
194 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttg |
293 |
Q |
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|||||||||||| ||| |||||| |||||||||||||| || |||||||||||| |||||| ||| || |||||| ||||||||||| ||||||| | |
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| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctcttggtcttactacaaaagacaccggttctcaagacactag |
1201450 |
T |
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| Q |
294 |
ttctcaaggttcgtaatta |
312 |
Q |
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||||||||||||||||||| |
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| T |
1201451 |
ttctcaaggttcgtaatta |
1201469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 1214741 - 1214837
Alignment:
| Q |
195 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacact |
291 |
Q |
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| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttctcaagacact |
1214837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 581268 - 581306
Alignment:
| Q |
313 |
attatattcataatacaagcttcatatcgtataaaagtc |
351 |
Q |
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| T |
581268 |
attatattcataatacaagcttcatttcgtataaaagtc |
581306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 1214868 - 1214906
Alignment:
| Q |
313 |
attatattcataatacaagcttcatatcgtataaaagtc |
351 |
Q |
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| T |
1214868 |
attatattcatgatacaagcttcatatcatataaaagtc |
1214906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 8188851 - 8188730
Alignment:
| Q |
191 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacac |
290 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| | ||||||||| |||||| |
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| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaagacgccggttctcaagacac |
8188752 |
T |
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| Q |
291 |
ttgttctcaaggttcgtaatta |
312 |
Q |
| |
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| T |
8188751 |
tagttcttaaggttggtaatta |
8188730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
126 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
166 |
Q |
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| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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