View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_17 (Length: 371)
Name: NF20392_low_17
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 35358943 - 35358595
Alignment:
| Q |
17 |
aattacaatgaacataaatgattctctgtctcatgttaatgtcaattactttgaccattaacaaatcaaaatttcannnnnnnncttaacgtcgtagtta |
116 |
Q |
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| T |
35358943 |
aattacaatgaacataaatcagtctctgtctcatgttaatgtcaattactttaaccattaacaaatcaaaatttcattttttttcttaacgtcgtagtta |
35358844 |
T |
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| Q |
117 |
taaaaagaagcatcatgcatgatagtgattatggaaacttaattctaaacagatgattctctaagatcccctttgggcataaactcaaatactggtctcc |
216 |
Q |
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| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35358843 |
tgaaaagaggcatcatgcatgttagtgattatggaaacttaattctaaacagatgattctctaagatcccctttgggcataaactcgaatactggtctcc |
35358744 |
T |
|
| Q |
217 |
ttc-gagcttcaacaagattaggatggtgaagttatctaaggtagctaaacataaaagagagaaacatattactgtgatttagaaaaagagaaggaaacc |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35358743 |
ttccgagcttcaacaagattaggatggtgaagttatctaaggtagctaaacataaaagagagaaacatattactgtgatttagaaaaagagaaggaaacc |
35358644 |
T |
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| Q |
316 |
tagtaacacactacaaggtttctggacctctttaagcaatttcatctca |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35358643 |
tagtaacacactacaaggtttctggacctctttaagcaatttcatctca |
35358595 |
T |
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