View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_18 (Length: 348)
Name: NF20392_low_18
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 38029904 - 38030097
Alignment:
| Q |
15 |
tgaatatggattatgggccttccattgggatgacgaggctggcaagatgggagcgtgcaaaggagtggaaaaagaaacctccgctggaaattaaggaact |
114 |
Q |
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| T |
38029904 |
tgaacatggattatgggcctagcattgggctgacgaggctggaacgatgggagcgtgcaaagaagtgggatatgaatcctccgcaggaaattaaggaact |
38030003 |
T |
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| Q |
115 |
gatcttgaagagtggtaatgatcagcaagaaggcctgtggaacaaacacgtttagaaggcttagatgttagtataatatataatcttgtttctt |
208 |
Q |
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| T |
38030004 |
gatcttgaagagtggtaatgatcagcaagaaggcctatggaacaaacgcgtttagaaggcttagatgttagtataatatataatcttgtttctt |
38030097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 192 - 333
Target Start/End: Original strand, 38030111 - 38030253
Alignment:
| Q |
192 |
atataatcttgtttctttatggaccttcttgcttagatttttctttgggaaaatcagtttcggttagtgtgttttgttacacaagttttatc-gatgtta |
290 |
Q |
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| T |
38030111 |
atataatcttgtttctttatggacctttttgtttagatttttcttagggaaaatcagtttctgttagtgtgttttgttttacaagttttatcaaatgtta |
38030210 |
T |
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| Q |
291 |
attggctgttaagtgaatgttgctgattgatatgatagaaact |
333 |
Q |
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| T |
38030211 |
attggctcttaagtgaatgttgctggttgatatgatagaaact |
38030253 |
T |
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