View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_19 (Length: 348)
Name: NF20392_low_19
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_19 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 42849251 - 42848925
Alignment:
| Q |
7 |
aagacaatgcaaaggattactttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaa |
105 |
Q |
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| T |
42849251 |
aagacaatgcaaaggattactttgttgaatgataaagttaaaaactaaaattccaatttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaa |
42849152 |
T |
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| Q |
106 |
agtggatgacaaaagcatgatttctaatggcagaacaagcatgttgaaatccatgaagggaatagtacttcacatcatcgatcaacaaccttgattttaa |
205 |
Q |
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| T |
42849151 |
agtggatgacaaaagcatgatttctaatggaagaacaagcatgttgaaatccatgaagggaatagtacttcacatc----atcaacaaccttgattttaa |
42849056 |
T |
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| Q |
206 |
acttcgtttccaatttaaatttctagtaaagagataattgtaacaccttctgcagaaaaagagacacgcaatgaattgacaattcctagtaaagaaggga |
305 |
Q |
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| T |
42849055 |
acttcgtttccaatttaaatttctagtaaagagataattgtaacacc-----------aagagacacgcaatgaattgacaattcctagtaaagaaggga |
42848967 |
T |
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| Q |
306 |
aagaattataagcctaatcaagttatatccatagagaatgcaa |
348 |
Q |
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| T |
42848966 |
aagaattataagcctaat-aagttatatccatagagaatgcaa |
42848925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 42855673 - 42855581
Alignment:
| Q |
243 |
ttgtaacaccttctgcagaaaa-agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatc |
334 |
Q |
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| T |
42855673 |
ttgtaacaccttctgcaaaaaagaaagacacgcaatgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatc |
42855581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 42856106 - 42856026
Alignment:
| Q |
47 |
aaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgattt |
128 |
Q |
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| T |
42856106 |
aaattgaaattcc-ttttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattt |
42856026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 42862838 - 42862724
Alignment:
| Q |
35 |
tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgatttctaatg |
134 |
Q |
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| T |
42862838 |
tgataaaggtaaaaatcgaaattccatgt-gtcttgaatttttgctttgataagacaaaggcaaaaggagaaatggatgagaaaagcataattttcaatg |
42862740 |
T |
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| Q |
135 |
gcagaacaagcatgtt |
150 |
Q |
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| T |
42862739 |
gcaacacaaacatgtt |
42862724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 42857226 - 42857184
Alignment:
| Q |
265 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaa |
307 |
Q |
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| T |
42857226 |
agagactcgcaatgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 42857693 - 42857614
Alignment:
| Q |
25 |
actttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaa |
104 |
Q |
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| T |
42857693 |
actttgttgaatgataaaggtaaaaattgaaatttcattt-gtcttgaatttttgctatgataaggaaaaggcaaaaagaa |
42857614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 42861557 - 42861513
Alignment:
| Q |
274 |
caatgaattgacaattcctagtaaagaagggaaagaattataagc |
318 |
Q |
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| T |
42861557 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
42861513 |
T |
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