View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_20 (Length: 344)
Name: NF20392_low_20
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 48960790 - 48961107
Alignment:
| Q |
10 |
aagaaaacagaacaaacattttcatctccacctcataggggcttgtttcctaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaa |
109 |
Q |
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| T |
48960790 |
aagaaaacagaacaaacactttcatctccacctcataggggcttgtttcccaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaa |
48960889 |
T |
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| Q |
110 |
cacaatattcaagtagttcttccccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960890 |
cacaatattcaagtagttcttccccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcg |
48960989 |
T |
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| Q |
210 |
tagcccaatgcattcgccaaatgccagatccactaattcaccaccctctcctttgacactcccaccttcgcaattcaaaactcgtgaagaacattctaat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960990 |
tagcccaatgcattcgccaaatgccagatccactaattcaccaccatctcctttgacactcccaccttcgcaattcaaaactcgtgaagaacattctaat |
48961089 |
T |
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| Q |
310 |
aagataccagtggaggca |
327 |
Q |
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|||||||||||||||||| |
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| T |
48961090 |
aagataccagtggaggca |
48961107 |
T |
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