View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_21 (Length: 341)
Name: NF20392_low_21
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 51944003 - 51944118
Alignment:
| Q |
1 |
catatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattatttca |
100 |
Q |
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| T |
51944003 |
catatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattacttca |
51944102 |
T |
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| Q |
101 |
gaaccccttttacatg |
116 |
Q |
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| T |
51944103 |
gaaccccttttacatg |
51944118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 51944254 - 51944329
Alignment:
| Q |
260 |
aaatatcatgtgacatttgtcaatcacaataatataaatgtataaaaagacaaaaaattatagttttcttctctctc |
336 |
Q |
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| T |
51944254 |
aaatattatgtgatatttgtcaatcacaatattacaaatgtataaaa-gacaaaaaattatagttttcttctctctc |
51944329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 5036379 - 5036417
Alignment:
| Q |
298 |
tgtataaaaagacaaaaaattatagttttcttctctctc |
336 |
Q |
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| T |
5036379 |
tgtataaaaagacaaaaaatcatagttttcttctctctc |
5036417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 42866503 - 42866566
Alignment:
| Q |
270 |
tgacatttgtcaatcacaataatataaatgtataaaaagacaaaaaattatagttttcttctctc |
334 |
Q |
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| T |
42866503 |
tgacattggtcaattacaatatcacaaatgtacaaaaagacaaaaaa-tatggttttcttctctc |
42866566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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