View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_22 (Length: 328)
Name: NF20392_low_22
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 76 - 318
Target Start/End: Complemental strand, 37742441 - 37742199
Alignment:
| Q |
76 |
tacatatttggttttgttgagctatctgtagtgaaatgtgcaattgaacttggtatagctgaagccattgaaaagcacaaaaaacccatgtcactactag |
175 |
Q |
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| T |
37742441 |
tacatatttggttttgttgagctagctgtagtgaaatgtgcaattgaacttggtatagctgaagccattgaaaagcacaaaaaacccatgtcactactag |
37742342 |
T |
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| Q |
176 |
agttatcatcaactctaaaatgtgattcttcatatgttaaccgtatcatgagattcctagtacataggaaaatatttaaaaccatgaataccaaccatga |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742341 |
agttatcatcaactctaaaatgtgattcttcatatgttaaccgtatcatgagattcctagtacataggaaaatatttaaaaccatgaataccaaccatga |
37742242 |
T |
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| Q |
276 |
tgactatcctagctatgttcaaacaccactttctcgacctttg |
318 |
Q |
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| T |
37742241 |
tgactatcctagctatgttcaaacaccactttctcgacgtttg |
37742199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 76 - 310
Target Start/End: Complemental strand, 8680253 - 8680019
Alignment:
| Q |
76 |
tacatatttggttttgttgagctatctgtagtgaaatgtgcaattgaacttggtatagctgaagccattgaaaagcacaaaaaacccatgtcactactag |
175 |
Q |
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|||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
8680253 |
tacatatttggttttgctgaccaagctgtggtgaaatgtgcaattgaacttggtatagctgaagccattgaaaagcatgggaaaccaatgtcactattag |
8680154 |
T |
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| Q |
176 |
agttatcatcaactctaaaatgtgattcttcatatgttaaccgtatcatgagattcctagtacataggaaaatatttaaaaccatgaataccaaccatga |
275 |
Q |
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| T |
8680153 |
agttatcatcaactctaggatgcaatccttcatatcttaaccgcatcatgagattcctaatacacaggaagatattcaaaaccatatctaccaaccatga |
8680054 |
T |
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| Q |
276 |
tgactatcctagctatgttcaaacaccactttctc |
310 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
8680053 |
aaactatccttactatgttcaaacaccactttctc |
8680019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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