View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_23 (Length: 327)
Name: NF20392_low_23
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_23 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 32914973 - 32915270
Alignment:
| Q |
11 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
110 |
Q |
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| T |
32914973 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
32915072 |
T |
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| Q |
111 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
210 |
Q |
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| T |
32915073 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
32915172 |
T |
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| Q |
211 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactc |
308 |
Q |
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| T |
32915173 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactc |
32915270 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 2308361 - 2308280
Alignment:
| Q |
227 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactc |
308 |
Q |
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| T |
2308361 |
ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactc |
2308280 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 9359281 - 9359361
Alignment:
| Q |
228 |
tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactc |
308 |
Q |
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| T |
9359281 |
tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactc |
9359361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 43805617 - 43805536
Alignment:
| Q |
227 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactc |
308 |
Q |
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| T |
43805617 |
ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactc |
43805536 |
T |
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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 520028 - 520057
Alignment:
| Q |
242 |
acattcttgaggattccaattccattcata |
271 |
Q |
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| T |
520028 |
acattcttgaggattccaattccattcata |
520057 |
T |
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