View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_27 (Length: 301)
Name: NF20392_low_27
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 52 - 279
Target Start/End: Complemental strand, 32464862 - 32464635
Alignment:
| Q |
52 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactatgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
151 |
Q |
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| T |
32464862 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactacgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
32464763 |
T |
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| Q |
152 |
ccgagtcaaagtaatcgagattgttaccaacaaatacaggtatacaagataaagaatgtaaatcagccgtaaacccatttaacttctccatctcgcctat |
251 |
Q |
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|||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
32464762 |
ccgagtcaaagtaaccgagattgctgccaacaaataccggtatacaagataaagaatgtaaatcagccataaacccatttaactcctccatctcgcctat |
32464663 |
T |
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| Q |
252 |
ataaatactggaaaaaactaaatgctag |
279 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32464662 |
ataaatactggaaaaaactaaatgctag |
32464635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32465840 - 32465782
Alignment:
| Q |
1 |
tgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465840 |
tgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
32465782 |
T |
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