View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20392_low_33 (Length: 273)

Name: NF20392_low_33
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20392_low_33
NF20392_low_33
[»] chr2 (8 HSPs)
chr2 (5-273)||(27148835-27149105)
chr2 (28-108)||(27149432-27149512)
chr2 (28-108)||(2869832-2869914)
chr2 (42-108)||(8039955-8040019)
chr2 (43-108)||(31055938-31056001)
chr2 (43-108)||(34682472-34682535)
chr2 (43-108)||(10445582-10445646)
chr2 (43-108)||(14699132-14699199)
[»] chr7 (6 HSPs)
chr7 (5-108)||(3047109-3047215)
chr7 (43-108)||(9235693-9235758)
chr7 (200-273)||(15486334-15486408)
chr7 (5-108)||(28617363-28617467)
chr7 (43-108)||(4796805-4796871)
chr7 (43-108)||(29159699-29159762)
[»] chr4 (5 HSPs)
chr4 (43-108)||(38152576-38152641)
chr4 (28-108)||(37781743-37781822)
chr4 (43-108)||(25862160-25862223)
chr4 (43-108)||(54867078-54867143)
chr4 (47-111)||(39245893-39245956)
[»] chr8 (3 HSPs)
chr8 (32-109)||(5990698-5990771)
chr8 (43-108)||(6127115-6127179)
chr8 (45-97)||(7493210-7493261)
[»] scaffold0184 (1 HSPs)
scaffold0184 (47-108)||(29620-29681)
[»] scaffold0148 (1 HSPs)
scaffold0148 (43-108)||(10624-10688)
[»] scaffold0078 (1 HSPs)
scaffold0078 (47-108)||(43163-43224)
[»] chr5 (5 HSPs)
chr5 (50-111)||(42127545-42127606)
chr5 (43-108)||(19588642-19588705)
chr5 (29-103)||(34842485-34842558)
chr5 (43-108)||(11181970-11182035)
chr5 (60-108)||(3880211-3880259)
[»] chr3 (4 HSPs)
chr3 (42-108)||(27038185-27038249)
chr3 (43-108)||(40592911-40592974)
chr3 (43-111)||(3328481-3328547)
chr3 (43-111)||(48438110-48438176)
[»] chr1 (4 HSPs)
chr1 (44-111)||(19072823-19072889)
chr1 (44-111)||(19120713-19120779)
chr1 (43-108)||(775568-775631)
chr1 (43-108)||(40816870-40816934)
[»] chr6 (3 HSPs)
chr6 (43-108)||(10077303-10077366)
chr6 (43-108)||(22963595-22963659)
chr6 (43-108)||(23824734-23824798)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 27149105 - 27148835
Alignment:
Q  5 ggagcagagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatatt 104  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27149105 ggagcaaagaaagtgataatcaatgagtaaagtagcatcaagcaacaacaacaataacatagatctaaatctatttgtaaagcaacaccacaagcatatt 27149006  T
Q  105 caaaacaccttgagagtgtagtagtacaaagaaatatgacaggattgctcaatgcctccactatttccaacaactaatggattttctaaaactctct--c 202  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |    
T  27149005 caaaacaccataagagtgtagtagtacaaagaaatacgacaggattgctcaatgcctccactatttccggcaactaatggattttctaaaactctctctc 27148906  T
Q  203 tctggaaatgtcccctgtaaccgnnnnnnncggcaacctaatctttctccggccaagctccgacgttgctc 273  Q
    ||| |||||||  ||||||||||       ||||||||| |||||||||| ||||||||||| | ||||||    
T  27148905 tctagaaatgtgacctgtaaccgtttttttcggcaacctcatctttctccagccaagctccggcattgctc 27148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 27149512 - 27149432
Alignment:
Q  28 tgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||| ||||| ||||| ||||| ||||||| ||||||||||| |||||||||| |||| || ||||||||||    
T  27149512 tgagtaaagtagcctcaagtaacaataacaacaaaatagttctaaatctatgtgtaaagcaataccataaacatattcaaa 27149432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 2869914 - 2869832
Alignment:
Q  28 tgagtaaagtagcatcaagcaacaacaacaataa--aatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||||| |||||||||||| ||  |||||| |||||||||  |||| |||||||||| |||||||||||||    
T  2869914 tgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaa 2869832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 8039955 - 8040019
Alignment:
Q  42 tcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  8039955 tcaagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 8040019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 31055938 - 31056001
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  31055938 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 31056001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 34682535 - 34682472
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  34682535 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 34682472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 10445646 - 10445582
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| |||||||||  |||| ||||| |||||||||||| |||||    
T  10445646 caagcaacaacaacaa-aaaacagacctaaatctaagtgtagagcaaaaccacaagcataatcaaa 10445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 14699199 - 14699132
Alignment:
Q  43 caagcaacaacaacaataaaat--agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| ||||   ||| |||||||||  |||| |||||||||||||||||| |||||    
T  14699199 caagcaacaacaacaacaaaaagcagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 14699132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 3047109 - 3047215
Alignment:
Q  5 ggagcagagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataa---aatagatctaaatctatttgtaaagcaacaccacaagcat 101  Q
    |||||| ||||||||||| ||| ||||||||||  | ||||||||||||||||||||   ||||| |||||| || | ||||||||||||||||||||||    
T  3047109 ggagcaaagaaagtgataatcaatgagtaaagtgtcctcaagcaacaacaacaataacaaaatagttctaaaactgtgtgtaaagcaacaccacaagcat 3047208  T
Q  102 attcaaa 108  Q
    | |||||    
T  3047209 aatcaaa 3047215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 9235758 - 9235693
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  9235758 caagcaacaacaacaaaaaaacagacctaaatctaaatgtagagcaacaccacaagcataatcaaa 9235693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 15486408 - 15486334
Alignment:
Q  200 ctctctggaaatgtcccctgtaaccgnnnnnnnc-ggcaacctaatctttctccggccaagctccgacgttgctc 273  Q
    |||||||||||||| |||||||||||       | ||||||||||||||||||||||||||||||| ||||||||    
T  15486408 ctctctggaaatgtgccctgtaaccgtttttatccggcaacctaatctttctccggccaagctccggcgttgctc 15486334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 28617467 - 28617363
Alignment:
Q  5 ggagcagagaaagtgatattcagtgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgt-aaagcaacaccacaagcatat 103  Q
    |||||| || ||||| || ||| ||||||||||||| ||||| ||||| ||||| |||||||| |||| |||    || |||||||||||||||||||||    
T  28617467 ggagcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaatagacctaagtcttagagtaaaagcaacaccacaagcatat 28617368  T
Q  104 tcaaa 108  Q
    |||||    
T  28617367 tcaaa 28617363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 4796871 - 4796805
Alignment:
Q  43 caagcaacaacaacaataaaat-agatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| ||||  ||| |||||||||  |||| |||||||||||||||||| |||||    
T  4796871 caagcaacaacaacaaaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 4796805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 29159699 - 29159762
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  29159699 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 29159762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 38152641 - 38152576
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||||||| ||| ||| |||||  |||| |||||||||||||||||| |||||    
T  38152641 caagcaacaacaacaataaaacagacctagatctaagtgtatagcaacaccacaagcataatcaaa 38152576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 37781743 - 37781822
Alignment:
Q  28 tgagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||| |||||| |||||||| ||| ||| |||| ||| |||||  ||| |||||||||||||||||||||||||    
T  37781743 tgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaagcaacaccacaagcatattcaaa 37781822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 25862223 - 25862160
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  25862223 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 25862160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 54867078 - 54867143
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| |||  || |||||  |||| |||||||||||||||||| |||||    
T  54867078 caagcaacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagcataatcaaa 54867143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 39245893 - 39245956
Alignment:
Q  47 caacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    |||||||||||| |||| ||| |||||||||  |||| |||||||||||| ||||| ||||||||    
T  39245893 caacaacaacaa-aaaacagacctaaatctaagtgtagagcaacaccacaggcataatcaaaaca 39245956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 5990771 - 5990698
Alignment:
Q  32 taaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaa 109  Q
    |||||||||||||||||||||||||    ||||||| |||||||||  |||| | ||| |||||||||||||||||||    
T  5990771 taaagtagcatcaagcaacaacaac----aaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaaa 5990698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 6127115 - 6127179
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| |||| ||||| ||  |||| |||||||||||||||||| |||||    
T  6127115 caagcaacaacaacaa-aaaacagatataaatttaagtgtagagcaacaccacaagcataatcaaa 6127179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 7493261 - 7493210
Alignment:
Q  45 agcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaa 97  Q
    |||||||||||||| ||| ||||||||||||||  |||| |||||||||||||    
T  7493261 agcaacaacaacaacaaa-tagatctaaatctaagtgtagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 29681 - 29620
Alignment:
Q  47 caacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||| |||| || || ||| |||| ||||||||||||||||||||||| |||||    
T  29681 caacaacaacaacaaaacagttcaaaaactatgtgtaaagcaacaccacaagcataatcaaa 29620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 10624 - 10688
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  10624 caagcaacaacaacaa-aaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 10688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 43163 - 43224
Alignment:
Q  47 caacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||| |||| || || ||| |||| ||||||||||||||||||||||| |||||    
T  43163 caacaacaacaacaaaacagttcaaaaactatgtgtaaagcaacaccacaagcataatcaaa 43224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 42127606 - 42127545
Alignment:
Q  50 caacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    ||||||||| |||| |||  |||||||| ||||| |||||||||||||||||| ||||||||    
T  42127606 caacaacaacaaaacagacttaaatctaattgtagagcaacaccacaagcataatcaaaaca 42127545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 19588642 - 19588705
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| ||||  || |||||||||  |||| |||||||||||||||||| |||||    
T  19588642 caagcaacaacaacaaaaaaa--gacctaaatctaagtgtagagcaacaccacaagcataatcaaa 19588705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 34842485 - 34842558
Alignment:
Q  29 gagtaaagtagcatcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatat 103  Q
    |||||||||||| ||||||| |||||||||| ||| | | ||| |||||  ||| ||||||||||||||||||||    
T  34842485 gagtaaagtagcctcaagcagcaacaacaat-aaacaaacctagatctaagtgtgaagcaacaccacaagcatat 34842558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 11182035 - 11181970
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| |||  ||||||||  |||| ||||| |||||||||||| |||||    
T  11182035 caagcaacaacaacaaaaaaacagacttaaatctaagtgtagagcaataccacaagcataatcaaa 11181970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 3880211 - 3880259
Alignment:
Q  60 aaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||| ||| |||||||||  ||||||||||||||||||||||| |||||    
T  3880211 aaaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaa 3880259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 27038185 - 27038249
Alignment:
Q  42 tcaagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||||  ||| ||||||| |||||  |||| |||||||||||||||||| |||||    
T  27038185 tcaagcaacaacaacaa--aaacagatctagatctaagtgtagagcaacaccacaagcataatcaaa 27038249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 40592974 - 40592911
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  40592974 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 40592911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 3328547 - 3328481
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    |||| |||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  3328547 caagaaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 3328481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 48438110 - 48438176
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    ||||||||||||||||  ||| ||| ||| |||||  |||| |||||||||||||||||| ||||||||    
T  48438110 caagcaacaacaacaa--aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaaaca 48438176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 19072823 - 19072889
Alignment:
Q  44 aagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    ||||||||||||||| |||  ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  19072823 aagcaacaacaacaa-aaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 19072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 19120713 - 19120779
Alignment:
Q  44 aagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaaaca 111  Q
    ||||||||||||||| |||  ||| |||||||||  |||| |||||||||||||||||| ||||||||    
T  19120713 aagcaacaacaacaa-aaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaaca 19120779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 775568 - 775631
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  775568 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 775631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 40816934 - 40816870
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| |||||||||  |||| ||||||||||| |||||| |||||    
T  40816934 caagcaacaacaacaa-aaaacagacctaaatctaagtgtagagcaacaccacgagcataatcaaa 40816870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 10077366 - 10077303
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    ||||||||||||||||  ||| ||| |||||||||  |||| |||||||||||||||||| |||||    
T  10077366 caagcaacaacaacaa--aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaa 10077303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 22963595 - 22963659
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| ||| |||||  |||| |||||||||||||||||| |||||    
T  22963595 caagcaacaacaacaa-aaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaa 22963659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 23824798 - 23824734
Alignment:
Q  43 caagcaacaacaacaataaaatagatctaaatctatttgtaaagcaacaccacaagcatattcaaa 108  Q
    |||||||||||||||| |||| ||| ||| |||||  |||| |||||||||||||||||| |||||    
T  23824798 caagcaacaacaacaa-aaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaa 23824734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University