View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_35 (Length: 267)
Name: NF20392_low_35
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 51302546 - 51302780
Alignment:
| Q |
9 |
cttcaatagttctaatttaatttagtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtgaacttgtgtatatttttccaaat |
108 |
Q |
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| T |
51302546 |
cttcaatagttctaatttaatttagtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtgaacttgtgtatatttttccaaat |
51302645 |
T |
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| Q |
109 |
gcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtgcaaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51302646 |
gcttgctgtttatgttttctgagggtaaaataatcaattaataatgacttttttccagggtacgagactaatgtaataattgaataactc-tgtgcaaca |
51302744 |
T |
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| Q |
209 |
ctagcttaaagtcattgcagtaaaggatgaatagca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51302745 |
ctagcttaaagtcattgcagtaaaggatgaatagca |
51302780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 50016499 - 50016738
Alignment:
| Q |
9 |
cttcaatagttctaatttaatttag--tattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtg---aacttgtgtatatttttc |
103 |
Q |
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| T |
50016499 |
cttcaatagttctaatttaatttagagtattgtaatattttaaattgatctgtgctgcattatgttatatcagtcggtgttgaacttatgtatatttttc |
50016598 |
T |
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| Q |
104 |
caaatgcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtg |
203 |
Q |
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| T |
50016599 |
caaatgcttgctgtttatgttttctgagagtaaaataatcaattaatgatgacttttttt-agggtacgagactaatgtaatagttgaataactattgtg |
50016697 |
T |
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| Q |
204 |
caacactagcttaaagtcattgcagtaaaggatgaatagca |
244 |
Q |
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| T |
50016698 |
caacactagctcaaagtcatggcagtaaaggatgaatagca |
50016738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 44113644 - 44113883
Alignment:
| Q |
9 |
cttcaatagttctaatttaattt--agtattaaaatattttaaattgatccacaatgcattatgttgcatcagtcggtg---aacttgtgtatatttttc |
103 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
44113644 |
cttcaatagttctaatttaattttgagtattgtaatattttaaattgatctgtgctgcattatgttatatcagtcggtgttgaacttatgtatatttttc |
44113743 |
T |
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| Q |
104 |
caaatgcttgctgtttatgttttctgagggtaaaataatcgattaataatgacttttttccagggtacgagactaatgtaataattgaataactcttgtg |
203 |
Q |
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| T |
44113744 |
ctaatgcttgctgtttatgttttctgagtgtaaaataatcaattaatgatgacttttttt-agggtacgagactaatgtaatagttgaataactattgtg |
44113842 |
T |
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| Q |
204 |
caacactagcttaaagtcattgcagtaaaggatgaatagca |
244 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| |
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| T |
44113843 |
caacactagctcaaagtcatggcagtaaaggatgaatagca |
44113883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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