View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20392_low_41 (Length: 245)

Name: NF20392_low_41
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20392_low_41
NF20392_low_41
[»] chr5 (5 HSPs)
chr5 (106-193)||(7992407-7992494)
chr5 (106-193)||(32325810-32325897)
chr5 (106-193)||(12904979-12905066)
chr5 (146-193)||(34641930-34641977)
chr5 (161-193)||(28827507-28827539)
[»] chr2 (7 HSPs)
chr2 (106-193)||(44673174-44673261)
chr2 (106-193)||(25438291-25438378)
chr2 (124-193)||(37154903-37154972)
chr2 (146-193)||(21006375-21006422)
chr2 (146-193)||(6536549-6536596)
chr2 (146-193)||(24132215-24132262)
chr2 (161-193)||(39574644-39574676)
[»] chr7 (5 HSPs)
chr7 (107-193)||(36167731-36167817)
chr7 (108-193)||(19886576-19886661)
chr7 (106-193)||(12859244-12859331)
chr7 (108-193)||(32775175-32775260)
chr7 (124-182)||(5465745-5465803)
[»] chr8 (9 HSPs)
chr8 (106-193)||(34784518-34784605)
chr8 (106-194)||(3117706-3117794)
chr8 (106-193)||(1548141-1548228)
chr8 (106-193)||(20900778-20900865)
chr8 (106-189)||(23033404-23033487)
chr8 (112-193)||(3277522-3277603)
chr8 (122-185)||(29168561-29168624)
chr8 (198-245)||(44113607-44113654)
chr8 (161-193)||(15657351-15657383)
[»] chr3 (5 HSPs)
chr3 (106-193)||(32130160-32130247)
chr3 (106-193)||(53208684-53208771)
chr3 (106-193)||(7322859-7322946)
chr3 (125-193)||(9454608-9454676)
chr3 (161-193)||(1915488-1915520)
[»] chr6 (1 HSPs)
chr6 (106-193)||(13425675-13425762)
[»] chr4 (7 HSPs)
chr4 (106-193)||(2588490-2588577)
chr4 (107-199)||(5650759-5650851)
chr4 (106-193)||(16497909-16497996)
chr4 (122-193)||(52249500-52249571)
chr4 (198-245)||(50016462-50016509)
chr4 (122-182)||(39599164-39599224)
chr4 (146-193)||(28075453-28075500)
[»] chr1 (1 HSPs)
chr1 (146-193)||(23963006-23963053)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 7992407 - 7992494
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7992407 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 7992494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 32325810 - 32325897
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32325810 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactac 32325897  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 12904979 - 12905066
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12904979 cggttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactac 12905066  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 34641930 - 34641977
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctac 34641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 28827539 - 28827507
Alignment:
Q  161 cgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||| ||||    
T  28827539 cgatcctacgtgctgggactcgttcctgtctac 28827507  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 44673261 - 44673174
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673261 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 44673174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 25438378 - 25438291
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25438378 cggttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactac 25438291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  124 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 21006375 - 21006422
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctac 21006422  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 6536596 - 6536549
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctac 6536549  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 24132262 - 24132215
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctac 24132215  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 39574644 - 39574676
Alignment:
Q  161 cgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||| ||||    
T  39574644 cgatcctacgtgctgggactcgttcctgtctac 39574676  T

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Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 36167731 - 36167817
Alignment:
Q  107 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36167731 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 36167817  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 19886661 - 19886576
Alignment:
Q  108 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19886661 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactac 19886576  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 12859244 - 12859331
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12859244 cggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 12859331  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 32775260 - 32775175
Alignment:
Q  108 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  32775260 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactac 32775175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 5465745 - 5465803
Alignment:
Q  124 gaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcg 182  Q
    ||||||||||||||| | |||||||||||| |||||| |||||||||  ||||||||||    
T  5465745 gaagcacggtcgaggggatgtggcacgtaaaatcgtgtgatcctacgacctgggactcg 5465803  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 34784518 - 34784605
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34784518 cggtttgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 34784605  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 3117794 - 3117706
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactact 194  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3117794 cggttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactact 3117706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 1548228 - 1548141
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1548228 cggttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactac 1548141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 20900865 - 20900778
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20900865 cggtttgtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactac 20900778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 23033487 - 23033404
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctga 189  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  23033487 cggttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctga 23033404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 3277603 - 3277522
Alignment:
Q  112 gtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactac 3277522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 29168561 - 29168624
Alignment:
Q  122 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttc 185  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgagctgggagtcgttc 29168624  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 44113607 - 44113654
Alignment:
Q  198 tgctgatagcagaccggaacagcccagacccgtggaccttcaatagtt 245  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||    
T  44113607 tgctgattgcagaccggaacagcccagacccgttgatcttcaatagtt 44113654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 15657383 - 15657351
Alignment:
Q  161 cgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactac 15657351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 32130247 - 32130160
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32130247 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 53208684 - 53208771
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53208684 cggtttgtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 53208771  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 7322946 - 7322859
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7322946 cggttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctac 7322859  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 9454676 - 9454608
Alignment:
Q  125 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactac 9454608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 1915520 - 1915488
Alignment:
Q  161 cgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||| ||||    
T  1915520 cgatcctacgtgctgggactcgttcctgtctac 1915488  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 13425675 - 13425762
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  13425675 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactac 13425762  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 2588490 - 2588577
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2588490 cggttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 2588577  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 5650759 - 5650851
Alignment:
Q  107 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacttattg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||    
T  5650759 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacctattg 5650851  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 16497909 - 16497996
Alignment:
Q  106 cggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  16497909 cggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactac 16497996  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 52249500 - 52249571
Alignment:
Q  122 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactac 52249571  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 50016462 - 50016509
Alignment:
Q  198 tgctgatagcagaccggaacagcccagacccgtggaccttcaatagtt 245  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||    
T  50016462 tgctgattgcagaccggaacagcccagacccgtagatcttcaatagtt 50016509  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 39599164 - 39599224
Alignment:
Q  122 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcg 182  Q
    |||||||||  | |||||| ||||| ||||||||||||| ||||||||| |||||||||||    
T  39599164 tcgaagcacaattgaggtgttgtggaacgtaagatcgtgtgatcctacgagctgggactcg 39599224  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 28075500 - 28075453
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| ||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctac 28075453  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 23963006 - 23963053
Alignment:
Q  146 gcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactac 193  Q
    |||||||||||| ||||||||||||||||||||| || ||||| ||||    
T  23963006 gcacgtaagatcatgcgatcctacgtgctgggacccgatcctggctac 23963053  T

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