View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_42 (Length: 242)
Name: NF20392_low_42
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 30293695 - 30293555
Alignment:
| Q |
59 |
gtacgtcatgccaaagtggatcaagagaaaatgatccctcatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgactt |
158 |
Q |
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| T |
30293695 |
gtacgtcatgctaaagtggatcaagagaaaatgatcccttatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgacta |
30293596 |
T |
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| Q |
159 |
aagaaaatgcttctatagtgtgttgataatgattctcattc |
199 |
Q |
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| T |
30293595 |
aagaaaatgcttctatagtgtgttgataatgattctcattc |
30293555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 30288832 - 30288670
Alignment:
| Q |
65 |
catgccaaagtggatcaagagaaaatgatccctcatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgacttaagaaa |
164 |
Q |
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||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
30288832 |
catgctaaagtggatcaagagaaaatgatcccttgtaagaatactaaatgtatggtaaataaattcatttatgttcagaaggatggtttgactacagaaa |
30288733 |
T |
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| Q |
165 |
atgcttctatagtgtgttgataatgattctcattcaagatttgtggattctactaaatgaaaa |
227 |
Q |
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| T |
30288732 |
atgcatctaaaatgtgttgatactgattctcattcaagatttgtggattctactaaatgaaaa |
30288670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 30293540 - 30293512
Alignment:
| Q |
186 |
aatgattctcattcaagatttgtggattc |
214 |
Q |
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| T |
30293540 |
aatgattctcattcaagatttgtggattc |
30293512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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