View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_5 (Length: 456)
Name: NF20392_low_5
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 7426678 - 7426230
Alignment:
| Q |
1 |
ccaagataatgtttgcaaaccgacaagataactttcacgttgtaataaaataaaagcttgaacaggttagttaaacctaattaagaaattaatgtatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7426678 |
ccaagataatgtttgcaaaccgacaagataactttcatgttgtaataaaataaaagcttgaacaggttagttaaacctaattaagaaattaatgtatatt |
7426579 |
T |
|
| Q |
101 |
ttattgctcattgattgaacccatttgttttaataaatgaatacgttaaagtttaataatcaaacaagcttgaacaggaagtatatatttgattataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||| |
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| T |
7426578 |
ttattgctcattgattgaacccatttgttttaataaatgaatacgttaaagtttaataattaaacaagcttgaaaatgaag--tatatttgattataaag |
7426481 |
T |
|
| Q |
201 |
aggtgtatctattcgagatattttgcctcactactcacggggccatgtaatcctcatctacagctttctctactatgattataaataaatga--ctctaa |
298 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7426480 |
aggtgtatctattggagatattttgcctcactactcacggggccatgtaatcctcatctacagctttctctactatgattataaataaatgactctctaa |
7426381 |
T |
|
| Q |
299 |
tttcatcacagtcaccctctaatctcac-----aacaaagtcacaaaactcactagaaatggtagtagaattattgccacttcctaattgggttacnnnn |
393 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7426380 |
tttcatcacagtcactctctaatctcacaccaaaacaaagtcacaaaactcactagaaatggtagtagaattattgccacttcctaattgggttactttt |
7426281 |
T |
|
| Q |
394 |
nnnactacatttatcatccttcttctctttacccgccgccgtcttcatctc |
444 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7426280 |
tttacaacatttatcatccttcttctctttacccgccgccgtcttcgtctc |
7426230 |
T |
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