View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20392_low_51 (Length: 211)
Name: NF20392_low_51
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 32494563 - 32494741
Alignment:
| Q |
19 |
ataagaagtatatgcagtgctatcaattgattttgcaaaattttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32494563 |
ataagaagtatatgcagtgctatcaattgattttgcaaatttttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagt |
32494662 |
T |
|
| Q |
119 |
ctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacgatgtttatagaattat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32494663 |
ctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacggtgtttatagaattat |
32494741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 28596343 - 28596511
Alignment:
| Q |
19 |
ataagaagtatatgcagtgctatcaattgattttgcaaaattttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||| | |||| |
|
|
| T |
28596343 |
ataagaagtatatgcagtgctatcaattaattttacaaaattctttcttcatcagcatgcatcatttgtttgccaattgctattaatggtgtctgttagt |
28596442 |
T |
|
| Q |
119 |
ctctttcatcattaaattgcaaattctttaatacattttcgttcctgtttctacaattgtacgatgtttata |
190 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
28596443 |
ctctttcatcattaaatt---aattcttttatacatttgcgttcctttttctacaattgtacggtgtttata |
28596511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University