View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20392_low_8 (Length: 439)
Name: NF20392_low_8
Description: NF20392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20392_low_8 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 11239810 - 11239400
Alignment:
| Q |
18 |
ggttagatgttctataggaagacactcattatcaagcttaatcttcaacttctgatcacaaaactcaatcaacttctaagtcaaaatagagaaaacaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11239810 |
ggttagatgttctataggaagacactcattatcaagcttaatcttcaacttctgatcacaaaactcaatcaacttctaagtcaaaatagagaaaaccact |
11239711 |
T |
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| Q |
118 |
attatgagttggagaacttgaaaataccacttatggattgacattaaatagaccttcatccacaaaaatctctagatagtgaagcaaaaagatgtcacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11239710 |
attatgagttggagaacttgaaaataccacttatggattgacattaaatagaccttcatccacaaaaatctctagatagtgaagcaaaaagatgtcacaa |
11239611 |
T |
|
| Q |
218 |
aatattagtaaagacaccatccatgactattattacgcccaaaaatcatcatcacgctaaacatataattgaaaactactttagttagttactgcagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
11239610 |
aatattagtaaagacaccatccatgactattattacgcccaaaagccatcatcacgctaaacatataattgaaaactactacagttagttactgcataaa |
11239511 |
T |
|
| Q |
318 |
acattgaagaccccataacc-attaaaagagcaagtttcgtatatgaatgacttacgtcaacatcttgcttggaagcttttgttaactgaatacaaccta |
416 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11239510 |
acattgaagaccccataaccaattaaaagagcaagtttcgtatatgaatgacttacgtcaacatcttgcttggaagcttttgttaaccgaatacaaccta |
11239411 |
T |
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| Q |
417 |
tatgataaatt |
427 |
Q |
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| T |
11239410 |
tatgataaatt |
11239400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 1166625 - 1166552
Alignment:
| Q |
18 |
ggttagatgttctataggaagacactcattatcaagcttaatcttcaacttctgatcacaaaactcaatcaact |
91 |
Q |
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||||| |||||||||||| || || || ||||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
1166625 |
ggttatatgttctatagggaggcattcgttatcaagcttgatcatgaacttctgatcacaaaactcaatcaact |
1166552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 28279 - 28206
Alignment:
| Q |
18 |
ggttagatgttctataggaagacactcattatcaagcttaatcttcaacttctgatcacaaaactcaatcaact |
91 |
Q |
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||||| |||||||||||| || || || ||||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
28279 |
ggttatatgttctatagggaggcattcgttatcaagcttgatcatgaacttctgatcacaaaactcaatcaact |
28206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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