View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20393_high_10 (Length: 259)

Name: NF20393_high_10
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20393_high_10
NF20393_high_10
[»] chr7 (7 HSPs)
chr7 (1-95)||(15578055-15578149)
chr7 (1-95)||(28750646-28750740)
chr7 (1-95)||(38916112-38916206)
chr7 (1-95)||(27230770-27230864)
chr7 (1-39)||(32741541-32741579)
chr7 (13-46)||(21972073-21972106)
chr7 (174-202)||(15577943-15577971)
[»] chr6 (6 HSPs)
chr6 (1-95)||(12307038-12307132)
chr6 (3-95)||(605277-605369)
chr6 (1-93)||(8701197-8701289)
chr6 (1-79)||(7727105-7727183)
chr6 (43-95)||(5365388-5365440)
chr6 (43-95)||(2481241-2481293)
[»] chr2 (3 HSPs)
chr2 (1-95)||(9914509-9914603)
chr2 (1-95)||(30674158-30674252)
chr2 (1-95)||(9074901-9074995)
[»] chr1 (3 HSPs)
chr1 (1-95)||(40889077-40889171)
chr1 (43-95)||(44681144-44681196)
chr1 (43-95)||(23272386-23272437)
[»] chr4 (7 HSPs)
chr4 (1-95)||(23643713-23643807)
chr4 (1-95)||(43013062-43013156)
chr4 (1-79)||(54714583-54714661)
chr4 (43-95)||(12632824-12632876)
chr4 (43-95)||(27108531-27108583)
chr4 (14-46)||(919096-919128)
chr4 (14-46)||(28104341-28104373)
[»] chr3 (4 HSPs)
chr3 (1-95)||(53153564-53153658)
chr3 (1-95)||(30384775-30384869)
chr3 (3-95)||(785491-785583)
chr3 (13-46)||(39737279-39737312)
[»] chr5 (3 HSPs)
chr5 (1-95)||(25672562-25672656)
chr5 (1-95)||(14394276-14394370)
chr5 (1-95)||(20983774-20983868)
[»] chr8 (3 HSPs)
chr8 (3-95)||(308606-308698)
chr8 (1-95)||(186979-187072)
chr8 (1-95)||(25276862-25276955)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15578149 - 15578055
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15578149 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 15578055  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 28750646 - 28750740
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28750646 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 28750740  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38916112 - 38916206
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38916112 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 38916206  T

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Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27230864 - 27230770
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
27230864 agtgagatataagtcaactaattaaaataagatataattgtatttattgtttgtttttgtagcactaacatcaacaattatgttatttatcatct 27230770  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32741541 - 32741579
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagtt 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
32741541 agtgagatataagtcaactaattaaattaagatatagtt 32741579  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 21972106 - 21972073
Alignment:
13 gtcaactaattaaaataagatatagttgtattta 46  Q
    |||||||||||||||||||| |||||||||||||    
21972106 gtcaactaattaaaataagaaatagttgtattta 21972073  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 15577971 - 15577943
Alignment:
174 aataatacctaataaattgaacgtaacgt 202  Q
    |||||||||||||||||||||||||||||    
15577971 aataatacctaataaattgaacgtaacgt 15577943  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 12307038 - 12307132
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12307038 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 12307132  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 605369 - 605277
Alignment:
3 tgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
605369 tgagatataaatcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 605277  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8701289 - 8701197
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcat 93  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8701289 agtgatatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcat 8701197  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7727105 - 7727183
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaatt 79  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7727105 agtgcgatataaatcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaatt 7727183  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 5365388 - 5365440
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||| || ||| |||||||||||||||||||    
5365388 tttattgtttgtctttgtagcactaatattatccattatgttatttatcatct 5365440  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 2481293 - 2481241
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||    
2481293 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatct 2481241  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9914603 - 9914509
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9914603 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 9914509  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30674158 - 30674252
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30674158 agtgagatataagtcatctaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 30674252  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9074995 - 9074901
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9074995 agtgagatataaatcaactaattaaaatgagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 9074901  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40889171 - 40889077
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40889171 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 40889077  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 44681144 - 44681196
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||    
44681144 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatct 44681196  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 23272386 - 23272437
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    ||||||||| || ||||||||||||| || |||| ||||||||||||||||||    
23272386 tttattgttggtctttgtagcactaatattatca-ttatgttatttatcatct 23272437  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23643807 - 23643713
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
23643807 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgttttcgtagcactaacatcatcaattatgttatttatcatct 23643713  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43013156 - 43013062
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
43013156 agtgagatataagtcaactaattaaaatgagatatagttgtatttattgtttgtttttgtagcattaacatcatcaattatgttatttatcatct 43013062  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 54714583 - 54714661
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaatt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54714583 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaatt 54714661  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 12632824 - 12632876
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||| || ||| |||||||||||||||||||    
12632824 tttattgtttgtctttgtagcactaatattatccattatgttatttatcatct 12632876  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 27108531 - 27108583
Alignment:
43 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||    
27108531 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatct 27108583  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 919128 - 919096
Alignment:
14 tcaactaattaaaataagatatagttgtattta 46  Q
    ||||||||||||||||||| |||||||||||||    
919128 tcaactaattaaaataagaaatagttgtattta 919096  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 28104373 - 28104341
Alignment:
14 tcaactaattaaaataagatatagttgtattta 46  Q
    ||||||||||||||||||| |||||||||||||    
28104373 tcaactaattaaaataagaaatagttgtattta 28104341  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 53153564 - 53153658
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
53153564 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaatgatgttatttatcatct 53153658  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30384775 - 30384869
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
30384775 agtgagatataagtcaactaattaaaataagatataattgtatttattgtttgtttttgtagcactaacatcattaattatgttatttatcatct 30384869  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 785491 - 785583
Alignment:
3 tgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
785491 tgagatgtaaatccactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 785583  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39737279 - 39737312
Alignment:
13 gtcaactaattaaaataagatatagttgtattta 46  Q
    |||||||||||||||||||| |||||||||||||    
39737279 gtcaactaattaaaataagaaatagttgtattta 39737312  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 25672656 - 25672562
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
25672656 agtgatatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcacaaacatcatcaattatgttatttatcatct 25672562  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14394370 - 14394276
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
14394370 agtgagatataagtcaactaattaaaataagatataattgtatttattatttgtttttgtaacactaacatcatcaattatgttatttatcatct 14394276  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20983868 - 20983774
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
20983868 agtgagatataagtcaactaattaaaatgagatatagttgtatttattgtttgtttttgtagtattaacatcatcaattatgttatttatcatct 20983774  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 308698 - 308606
Alignment:
3 tgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
308698 tgagatataaatcaactaattaaaataagatatagttatatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 308606  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 187072 - 186979
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
187072 agtgagatataagtcaactaattata-taagatataattgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 186979  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25276862 - 25276955
Alignment:
1 agtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatct 95  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25276862 agtgagatataagtcaagtaattaaaataaaatatagttgtatttattgtttgttttt-tagcactaacatcatcaattatgttatttatcatct 25276955  T

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