View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20393_high_14 (Length: 243)
Name: NF20393_high_14
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20393_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 37596691 - 37596841
Alignment:
| Q |
54 |
tgaaattatttcttttttatttcttactttatgtgtttagttaactgagaaagtataatatgatttttccttttcacatttcaacttatatggaggaaaa |
153 |
Q |
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| T |
37596691 |
tgaaattatttcttttttatttcttactttatgt--ttagttaactgagaaagtataatatgatttttccttttcacatttcaacttatatggaggaaaa |
37596788 |
T |
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| Q |
154 |
aattgctttgnnnnnnngaagtttccaagtttttaaaaagaatatcagttatt |
206 |
Q |
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| T |
37596789 |
aattgctttgtttttttgaagtttccaagtttttaaaaagaatatcagttatt |
37596841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 37596862 - 37596901
Alignment:
| Q |
204 |
attacttctccaaaaaaggaaattcctacaattggattct |
243 |
Q |
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| T |
37596862 |
attacttctccaaaaaaggaaattcctacaattggattct |
37596901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37596673 - 37596702
Alignment:
| Q |
1 |
cataagtaagctgatcaatgaaattatttc |
30 |
Q |
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| T |
37596673 |
cataagtaagctgatcaatgaaattatttc |
37596702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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