View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20393_high_3 (Length: 469)
Name: NF20393_high_3
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20393_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 48236921 - 48237362
Alignment:
| Q |
18 |
aacaagaaaaattattgttttacatcaaaaaatttgatttcgnnnnnnntgtcatttgctttttgtatttatttttcaaatctgtgcaagttgaagaaga |
117 |
Q |
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| T |
48236921 |
aacaagaaaaattattgttttacatcaaaaaatttgatttcgaaaaaaatgtcatttgctttttgtatttatttttcaaatctgtgcaagttgaag---a |
48237017 |
T |
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| Q |
118 |
agatatagagataaaacatatggtttcacgtacagtgtctgtattttgatgttcgtacaacacacctgtttatcacacattttagagtcgtttcataatt |
217 |
Q |
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| T |
48237018 |
agatatagagataaaacatatggtttcacgtacagtgtctgtattttgatgttcgtacaacacacctgtttatcacacattttagagtcgtttcataatt |
48237117 |
T |
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| Q |
218 |
ttcatttgacaaacttaagagttcattctttcctaccatcacttaatttaaagcatcatgatcaataatgaaacttatttatgatttttataattacttg |
317 |
Q |
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| T |
48237118 |
ttcatttgacaaacttaagagttcattctttcctaccatcacttaatttaaagcatcatgatcaataatgaaacttatttatgatttttataattactta |
48237217 |
T |
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| Q |
318 |
gtattttgtttagtaattgttactagcactttgttcctattgcataattcacatcacctgattttttgctgatattgcttgtttgcaagctgagctgtac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237218 |
gtattttgtttagtaattgttactagcactttgttcctattgcataattcacatcacctgattttttgctgatattgcttgtttgcaagctgagctgtac |
48237317 |
T |
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| Q |
418 |
atgtccatagtttgcttcaattcaagcctcaatcttttcatctca |
462 |
Q |
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| T |
48237318 |
atgtccatagtttgcttcaattcaagcctcaatcttttcatctca |
48237362 |
T |
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