View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20393_low_15 (Length: 238)
Name: NF20393_low_15
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20393_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3808163 - 3808387
Alignment:
| Q |
1 |
caacttaataagtttttattctaagttttggtacaatcaacttaataagttttattcctggtcgttttgaacttggttaatttcatttgttccccttttc |
100 |
Q |
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| T |
3808163 |
caacttaataagtttttattctaagttttggtacaatcaacttaataagttttattcctgatcgttttgaacttggttaatttcatttgttccccttttc |
3808262 |
T |
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| Q |
101 |
tttggttaaaactaagtagtgagtgacttgcatatgtcacaccccacatactttgtatgtaaatcgccaatattttatagagatagatgtgtggaaaatt |
200 |
Q |
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| T |
3808263 |
tttggttagaactaagtagtgagtgacttgcatatgtcacaccccacatactttgtatgtaaatcgccaatattttatagagatagatgtgtggaaaatt |
3808362 |
T |
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| Q |
201 |
ttggttaaagtttataaatagctct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
3808363 |
ttggttaaagtttataaatagctct |
3808387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 3776491 - 3776593
Alignment:
| Q |
74 |
tggttaatttcatttgttccccttttcttt--ggttaaaactaagtagtgagtgacttgcatatgtcacaccccacatactttgtatgtaaatcgccaat |
171 |
Q |
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||||||||||| |||||||| ||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
3776491 |
tggttaatttcttttgttcctcttttttttttggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatac-ttgtatgtaaatcgccaat |
3776589 |
T |
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| Q |
172 |
attt |
175 |
Q |
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|||| |
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| T |
3776590 |
attt |
3776593 |
T |
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