View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20393_low_2 (Length: 471)

Name: NF20393_low_2
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20393_low_2
NF20393_low_2
[»] chr7 (2 HSPs)
chr7 (21-459)||(33110343-33110781)
chr7 (101-172)||(38846223-38846294)
[»] chr8 (4 HSPs)
chr8 (23-280)||(33221928-33222186)
chr8 (117-222)||(18551482-18551587)
chr8 (98-171)||(613273-613346)
chr8 (98-171)||(619667-619740)
[»] chr1 (2 HSPs)
chr1 (123-222)||(9802725-9802824)
chr1 (101-172)||(47706302-47706373)
[»] scaffold1416 (1 HSPs)
scaffold1416 (122-173)||(176-227)
[»] chr6 (4 HSPs)
chr6 (122-173)||(6343504-6343555)
chr6 (98-172)||(14816080-14816154)
chr6 (99-172)||(28518623-28518696)
chr6 (131-179)||(15514410-15514458)
[»] chr5 (1 HSPs)
chr5 (122-173)||(16989768-16989819)
[»] chr2 (2 HSPs)
chr2 (122-173)||(20482603-20482654)
chr2 (122-173)||(28018533-28018584)
[»] chr4 (1 HSPs)
chr4 (120-216)||(8122072-8122168)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Original strand, 33110343 - 33110781
Alignment:
Q  21 aggagtgaattattttgatacttttaatcctgttacaaaactcactaatgcgtttgttacttgctttagctgctacacataattggcatctccaaaaact 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33110343 aggagtgaattattttgatacttttaatcctgttacaaaactcactaatgcgcttgttacttgctttagctgctacacataattggcatctccaaaaact 33110442  T
Q  121 ggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110443 ggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaa 33110542  T
Q  221 ctactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctcnnnnnnnctattggattcactcaatcccaatctgatt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  33110543 ctactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctctttttttctattggattcactcaatcccaatctgatt 33110642  T
Q  321 attcattgttcactnnnnnnnncctctactctttcacaactctattggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactc 420  Q
    ||||||||||||||        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110643 attcattgttcactaaaaaaaacctctactctttcacaactctgttggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactc 33110742  T
Q  421 tgttaaacttggtccttacttcttccgctcttcatctca 459  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  33110743 tgttaaacttggtccttacttctcccgctcttcatctca 33110781  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 38846294 - 38846223
Alignment:
Q  101 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 172  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  38846294 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 38846223  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 33221928 - 33222186
Alignment:
Q  23 gagtgaattattttgatacttttaatcctgttacaaaactcactaatgcgt--ttgttacttgctttagctgctacacataattggcatctccaaaaact 120  Q
    ||||||| |||||||| ||||||| || |||  ||||||| |||| || ||  ||||| ||||| |||| ||||||||||||||||||||||||| || |    
T  33221928 gagtgaactattttgacacttttagtcatgtagcaaaacttactattgtgtgtttgttgcttgcattagatgctacacataattggcatctccaacaatt 33222027  T
Q  121 ggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaa 220  Q
    | ||||||| ||||| ||  ||||||||||||||||| | |||||   ||||||||||| |||| |||||   |||| |||||| |||||||||| ||||    
T  33222028 gaatgtcaaaaatgcatttattcatggagaccttgataaggatgtaagcatgaagcttcctcctagtgtttcatctttcaaacctaatcaagtttctaaa 33222127  T
Q  221 ctactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatc 280  Q
     | | | ||| ||||||| |||||||| |||| ||| |  |||||| | |||||||||||    
T  33222128 ttgc-tcaaatctctttagggtttgaagtaagccaaccaccaatggttttccaaattatc 33222186  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 18551587 - 18551482
Alignment:
Q  117 aactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 216  Q
    |||| |||||||||||||||||||||||||| ||  |  | ||| ||||||||||| | |||| ||| |||||| | || ||||||||||||||||||||    
T  18551587 aacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaatcaagtttg 18551488  T
Q  217 taaact 222  Q
    ||||||    
T  18551487 taaact 18551482  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 613273 - 613346
Alignment:
Q  98 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 171  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  613273 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 613346  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 619667 - 619740
Alignment:
Q  98 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 171  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  619667 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 619740  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 9802824 - 9802725
Alignment:
Q  123 atgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 222  Q
    |||||||||||||||| |||||||| ||| |  | ||| ||||||||||| | |||| ||| |||||| |  | |||||||||||||||||||| |||||    
T  9802824 atgtcaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatcaagtttgcaaact 9802725  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 47706373 - 47706302
Alignment:
Q  101 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 172  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  47706373 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 47706302  T

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Target: scaffold1416 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 227 - 176
Alignment:
Q  122 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 173  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  227 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 176  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 6343504 - 6343555
Alignment:
Q  122 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 173  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  6343504 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 6343555  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 14816080 - 14816154
Alignment:
Q  98 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 172  Q
    |||||||||||| | ||  |||| |||||||||||||| || |||||||| || ||| | |||||||||||||||    
T  14816080 cataattggcatttacatcaacttgatgtcaataatgcctttcttcatggtgaacttcaggaagatgtgtacatg 14816154  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 28518696 - 28518623
Alignment:
Q  99 ataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 172  Q
    ||||||||||||| ||  |||| ||||||||||||||||| || ||||  || ||| | |||||||||||||||    
T  28518696 ataattggcatcttcaccaactagatgtcaataatgcttttctgcatgaggatcttcaagaagatgtgtacatg 28518623  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 15514458 - 15514410
Alignment:
Q  131 aatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc 179  Q
    ||||||||||| |||||||||||||||||||| || || ||||| ||||    
T  15514458 aatgctttcctacatggagaccttgatgaagaagtatatatgaatcttc 15514410  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 16989819 - 16989768
Alignment:
Q  122 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 173  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  16989819 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 16989768  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 20482654 - 20482603
Alignment:
Q  122 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 173  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  20482654 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 20482603  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 28018533 - 28018584
Alignment:
Q  122 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 173  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  28018533 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 28018584  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 8122168 - 8122072
Alignment:
Q  120 tggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 216  Q
    ||||||| || ||||| || ||||||||||| ||| |||||||||| |||||||   ||| ||| ||||||  | |||| |||||||| ||||||||    
T  8122168 tggatgtaaacaatgcctttcttcatggagatcttcatgaagatgtttacatgaccattcctccaggtgtttctacttcaaaaccaaaccaagtttg 8122072  T

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