View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20393_low_4 (Length: 424)
Name: NF20393_low_4
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20393_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 19135650 - 19135516
Alignment:
| Q |
276 |
tttaacaatccaagttatcatgcacaactaaaaagtaatcaatctcttaatcctcctccagttcaacaaaacctcccacacatgaatcattttcctttgt |
375 |
Q |
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| T |
19135650 |
tttaacaatccaagttatcatgcccaactagaaagtaatcaatctcttaatcctcctcaatttcaacaaaacctcccacacatgaatcattttcctttgt |
19135551 |
T |
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| Q |
376 |
tcttgcatcaatttattgaagatgtcgtgagtgtc |
410 |
Q |
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| T |
19135550 |
tcttgcatcaatttattgaagatgtcgtgagtgtc |
19135516 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 19135860 - 19135766
Alignment:
| Q |
5 |
ctagtagagacaacttttgtatttgatgatttggggtatgcattagtgattcaatgttgtctttcaatttatttatcaaggctaaatgttgttct |
99 |
Q |
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| T |
19135860 |
ctagtagagacaacttttgtatttgataatttggggtatgcatttgtgattcaatgttgtctttcaatgtatttatcaaggctaaatgttgttct |
19135766 |
T |
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