View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20393_low_7 (Length: 312)
Name: NF20393_low_7
Description: NF20393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20393_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 42309150 - 42309444
Alignment:
| Q |
1 |
aaattagaaattattatcaattccaattaatttctccaaaatggatgaaaagaaaataatagcttattttataaataaataatcacagcaatgagaaagc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309150 |
aaattagaaatttttatcaattccaattaatttctccaaaatggatgaaaagaaaataatagcttattttataaataaataatcacagcaatgagaaagc |
42309249 |
T |
|
| Q |
101 |
aaaggatgcaattttctactcctataacagacacatcaatggttttgcagcaatattgaaagatgaagaagcagatgaacttgcaagtaagcaaattatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42309250 |
aaaggatgcaattttctactcctataacagacacatcaatggttttgcagcaatattgaaagatgaagaagcagatgagcttgcaagtaagcaaattatg |
42309349 |
T |
|
| Q |
201 |
ttttaaaaaatgactattagac--aataaaataaagagtcattttaattttcaattaaaaacttgatgtgcaggaaatccaaatgtagtgtctgt |
293 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42309350 |
ttttaaaaaatgactattagacaaaataaaataaagagtcattttaattttcaatcaaaaacttgatgtgcaggaaatccaaatgtagtgtctgt |
42309444 |
T |
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