View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20394_high_1 (Length: 429)
Name: NF20394_high_1
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 40283118 - 40283519
Alignment:
| Q |
12 |
tagcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40283118 |
tagcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa |
40283217 |
T |
|
| Q |
112 |
aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40283218 |
aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg |
40283317 |
T |
|
| Q |
212 |
aatttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40283318 |
aatttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacc |
40283417 |
T |
|
| Q |
312 |
aattgaggaatggaaagtatcacttggtaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct |
411 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40283418 |
aattgaggaatggaaagcatcacttgctaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct |
40283517 |
T |
|
| Q |
412 |
tt |
413 |
Q |
| |
|
|| |
|
|
| T |
40283518 |
tt |
40283519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 40332959 - 40333164
Alignment:
| Q |
14 |
gcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaa |
113 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40332959 |
gcaaaggctacatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaa |
40333058 |
T |
|
| Q |
114 |
ggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||| | ||||||||||||| |||||||||| |||| |
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| T |
40333059 |
ggttagagatgttgtgtttgagtggctaaaagaagcagacataatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaa |
40333158 |
T |
|
| Q |
214 |
tttaat |
219 |
Q |
| |
|
|||||| |
|
|
| T |
40333159 |
tttaat |
40333164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 40386237 - 40386481
Alignment:
| Q |
14 |
gcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaa |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
40386237 |
gcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaa |
40386336 |
T |
|
| Q |
114 |
ggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || |||| ||| ||||||||||||||| | ||||||||||||| |||||||||| |||| |
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|
| T |
40386337 |
ggttagagatgttgtgtttgagtggctaaaagaagcagaaatagtcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaa |
40386436 |
T |
|
| Q |
214 |
tttaatgaattatatgaaaaaataaaggcactaaatgggaaatgt |
258 |
Q |
| |
|
|||||| |||| | |||||||| | ||||||||| ||||||| |
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|
| T |
40386437 |
tttaataaattgcaggaaaaaattacagcactaaataagaaatgt |
40386481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 40375990 - 40376197
Alignment:
| Q |
12 |
tagcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaa |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||| || |||||||||||||||||||||| |||||||||| |
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|
| T |
40375990 |
tagcaaaggctatatgaaagttgaaagacaaaagaacaaactctattcaaatcgcgatcgtgtgcatgcaaaagttgaagcaattgatcctaaaactgaa |
40376089 |
T |
|
| Q |
112 |
aaggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatg |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| || ||||||||||||| |||||||||| || |
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|
| T |
40376090 |
aaggtcagagatgttgtgtttgagtggctaaaaaaaacagacataatcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggattg |
40376189 |
T |
|
| Q |
212 |
aatttaat |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
40376190 |
aatttaat |
40376197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 40598697 - 40598559
Alignment:
| Q |
55 |
atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca |
154 |
Q |
| |
|
||||||||||| |||| || ||| | |||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||| | |
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|
| T |
40598697 |
atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata |
40598598 |
T |
|
| Q |
155 |
tgatcatacaagaaatggagaatcttacaatacaatcaa |
193 |
Q |
| |
|
| |||| ||||| | || ||||| ||| ||||||||| |
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|
| T |
40598597 |
tactcatgcaagaggttgaaaatctgacactacaatcaa |
40598559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 40303490 - 40303559
Alignment:
| Q |
342 |
atggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct |
411 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
40303490 |
atggcagattttcatcagttttagaggagaagatactcggtactcttttacgggttttctctatgatgct |
40303559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 40311103 - 40311165
Alignment:
| Q |
349 |
attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgct |
411 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
40311103 |
attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgct |
40311165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 40276849 - 40276961
Alignment:
| Q |
55 |
atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca |
154 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||||||||||| || || ||| ||||| || |||| |||| | |||||||||||||| |||||| |
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|
| T |
40276849 |
atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcagaca |
40276948 |
T |
|
| Q |
155 |
tgatcatacaaga |
167 |
Q |
| |
|
| |||||||||| |
|
|
| T |
40276949 |
tactcatacaaga |
40276961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 40333946 - 40334001
Alignment:
| Q |
341 |
aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggt |
396 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40333946 |
aatggcagatgtttctcagttttagaggggaagatactcgctactcttttacaggt |
40334001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 40597830 - 40597781
Alignment:
| Q |
286 |
gtgggatcttccttcggaagtaaaccaattgaggaatggaaagtatcact |
335 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
40597830 |
gtgggatcttccttaagaggtaaaccaattgaggaatggaaagcatcact |
40597781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 40387224 - 40387279
Alignment:
| Q |
341 |
aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggt |
396 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40387224 |
aatgggagatgtttctcagttttagaggggaagatactcgctactcttttacaggt |
40387279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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