View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20394_high_2 (Length: 300)
Name: NF20394_high_2
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 42624963 - 42624676
Alignment:
| Q |
7 |
gtgagatgaacacgattatctgagtgaatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgat |
106 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42624963 |
gtgaaatgaacacgattatctgaatggatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgat |
42624864 |
T |
|
| Q |
107 |
tcagttgattcatgaacattttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgtaggc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42624863 |
tcagttgattcatgaacattttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgcaggc |
42624764 |
T |
|
| Q |
207 |
taaaatcaaagactttatgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattct |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42624763 |
taaaatcaaagactttatgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattct |
42624676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 35433101 - 35433166
Alignment:
| Q |
39 |
catactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttg |
104 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| ||| | ||||||||||||| ||||||||| |
|
|
| T |
35433101 |
catacgacaatactccacactgtccacccttcttgcatctccgtggttgagacgatcattaatttg |
35433166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University