View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20394_low_4 (Length: 242)
Name: NF20394_low_4
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 34584583 - 34584796
Alignment:
| Q |
18 |
tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaat |
117 |
Q |
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| T |
34584583 |
tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgtatatgttgtcaagagtcccttgaatcttttcttcaataaat |
34584682 |
T |
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| Q |
118 |
tgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgctgatgcccattggtttgccttgctgatccacttttctattcatgtttcct |
217 |
Q |
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| T |
34584683 |
tgttttgaaattatcttttattcagttgaagagtgtttactcatacttgctgatgcccatttgtttgccttgctgatccacttttctattcatgtttcct |
34584782 |
T |
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| Q |
218 |
tgcttggtcccttt |
231 |
Q |
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|||||||||||||| |
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| T |
34584783 |
tgcttggtcccttt |
34584796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 34586015 - 34586174
Alignment:
| Q |
6 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
101 |
Q |
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| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
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| Q |
102 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgctgat |
171 |
Q |
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| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgctgat |
34586174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 19179735 - 19179873
Alignment:
| Q |
57 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
154 |
Q |
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| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
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| Q |
155 |
tactcatacttgctgatgcccattggtttgccttgctgatc |
195 |
Q |
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| T |
19179833 |
tactcatacttgctgatgccctttactttgccttgcagatc |
19179873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 1478115 - 1478233
Alignment:
| Q |
57 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
154 |
Q |
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| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
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| Q |
155 |
tactcatacttgctgatgccc |
175 |
Q |
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||||||||||||||||||||| |
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| T |
1478213 |
tactcatacttgctgatgccc |
1478233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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