View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20394_low_5 (Length: 242)
Name: NF20394_low_5
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34584829 - 34585066
Alignment:
| Q |
1 |
tcttgaaagggttcaacaaagatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttca |
100 |
Q |
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| T |
34584829 |
tcttgaaagggttcaacaaagatgcaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttca |
34584928 |
T |
|
| Q |
101 |
acttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgtt |
200 |
Q |
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| T |
34584929 |
acttaatcaatagtaatcagatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattacttcatgagcatgagtcaacatcgtt |
34585028 |
T |
|
| Q |
201 |
acagtacaagcatgatacctcgacgcattttttaccta |
238 |
Q |
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| T |
34585029 |
acagtacaagcatgatacctcgacgcattttttaccta |
34585066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 34586439 - 34586641
Alignment:
| Q |
1 |
tcttgaaagggttcaacaaagatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttca |
100 |
Q |
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| T |
34586439 |
tcttgaaagggttcaacaaagatgcaaatatt-----tgttcttga-tttcattaagcaac-taattaatattgtgaatggatatgaaaatgtgttctca |
34586531 |
T |
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| Q |
101 |
acttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgtt |
200 |
Q |
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| T |
34586532 |
actgaatcgatagttatcaaatcattatgt----acagttgttggtatcctactaaga---tgtaagaaaattacttcatgagcatgagtcaacattgtt |
34586624 |
T |
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| Q |
201 |
acagtacaagcatgata |
217 |
Q |
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| T |
34586625 |
acaatacaagcatgata |
34586641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 34582916 - 34583022
Alignment:
| Q |
79 |
tggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttc |
178 |
Q |
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||||||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||| |
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| T |
34582916 |
tggatatgaaaatgtgttctcaactaaatcaatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaattc |
34583012 |
T |
|
| Q |
179 |
atgagcatga |
188 |
Q |
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| T |
34583013 |
acgagcatga |
34583022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27016182 - 27015951
Alignment:
| Q |
1 |
tcttgaaagggttcaacaaagatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttca |
100 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| ||||||||| |||||||| |
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| T |
27016182 |
tcttgaaagggttcaacaatgatgcaaatgttgttcttgatcttgacttgcaataatcaacccaattaatgttgtgaatg--tatgaaaatctgttttca |
27016085 |
T |
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| Q |
101 |
acttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgtt |
200 |
Q |
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||||||||||||||||| | |||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
27016084 |
acttaatcaatagtaattaaatcaatatttttgtacaatttt-ggcatcatactaagaagatggaaggaaattacttcatgagcaattgtcaacatcgtt |
27015986 |
T |
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| Q |
201 |
acagtacaagcatgatacctcgacgcattttttac |
235 |
Q |
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| T |
27015985 |
acagtacaagcatgataccttgatgcattttttac |
27015951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 51201168 - 51201289
Alignment:
| Q |
65 |
attaatattgtgaatggatatgaaaatttgttttcaacttaatc-aatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatg |
163 |
Q |
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||||||||||| |||| || ||||||| ||||||||| |||||| |||||||||||||| ||||||||| | |||||||||| |||||||| |||||| |
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| T |
51201168 |
attaatattgtaaatgaatctgaaaatgtgttttcaaattaatccaatagtaatcagataaatatttttgttcaatttttggcatcatact---aagatg |
51201264 |
T |
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| Q |
164 |
gaagaaaattacttcatgagcatga |
188 |
Q |
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|||||||||||||||||| ||||| |
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| T |
51201265 |
taagaaaattacttcatgatcatga |
51201289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5327851 - 5327807
Alignment:
| Q |
189 |
gtcaacatcgttacagtacaagcatgatacctcgacgcatttttt |
233 |
Q |
| |
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||||||||||||| |||||||||||||||||| || ||||||||| |
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| T |
5327851 |
gtcaacatcgttatagtacaagcatgataccttgatgcatttttt |
5327807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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