View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20394_low_6 (Length: 241)
Name: NF20394_low_6
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2213418 - 2213649
Alignment:
| Q |
1 |
ttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgagtgaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2213418 |
ttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgattgaaac |
2213517 |
T |
|
| Q |
101 |
tctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2213518 |
tctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgc |
2213617 |
T |
|
| Q |
201 |
cttgttatagtattccttttactagcttcttc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2213618 |
cttgttatagtattccttttactagcttcttc |
2213649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 2200767 - 2200932
Alignment:
| Q |
1 |
ttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttg-----tttcttgagt |
95 |
Q |
| |
|
|||||||||||| ||||| || ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
2200767 |
ttatttatttctatgtcttctgtgttttcctttggttgttcttgtctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttctggatt |
2200866 |
T |
|
| Q |
96 |
gaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctct |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
2200867 |
gaaactctgtttcatcttttgaatgtctactttctacggtgttctgcttctatgatttattgctct |
2200932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University