View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20394_low_7 (Length: 241)

Name: NF20394_low_7
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20394_low_7
NF20394_low_7
[»] chr1 (2 HSPs)
chr1 (2-226)||(8167054-8167278)
chr1 (124-203)||(50381464-50381543)
[»] chr5 (4 HSPs)
chr5 (7-183)||(36058486-36058662)
chr5 (7-183)||(3140459-3140635)
chr5 (157-208)||(29412878-29412929)
chr5 (161-205)||(5747926-5747970)
[»] chr6 (1 HSPs)
chr6 (1-183)||(1461889-1462071)
[»] chr8 (2 HSPs)
chr8 (7-180)||(34681902-34682075)
chr8 (161-208)||(43972085-43972132)
[»] chr2 (1 HSPs)
chr2 (157-208)||(13389961-13390012)
[»] chr7 (1 HSPs)
chr7 (156-208)||(43014579-43014631)
[»] scaffold0006 (1 HSPs)
scaffold0006 (157-208)||(72081-72132)
[»] chr4 (2 HSPs)
chr4 (157-185)||(52523961-52523989)
chr4 (160-208)||(54006730-54006778)
[»] chr3 (1 HSPs)
chr3 (161-205)||(54089227-54089271)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 8167278 - 8167054
Alignment:
Q  2 aaagcccaacaattcaaacaaaataaaataatattgtttaatctgcaggtggggccgctgcttttggtgtaccgtgtgcgagcaaaaaattaaaccaagt 101  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||    
T  8167278 aaagcccaacaactcaaacaaaatgaaataatattgtttaatctgtaggtggggccgttgcttttggtgtaccatgtgccagcaaaaaattaaagcaagt 8167179  T
Q  102 tgcaggtgataaatctaaactgttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaagaactcctcattctcatacta 201  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  8167178 tgcatgtgataaatctaaacggttggaataaaaaatcaatatatcaatgattcatattaaactttcccatcataaaaaagaactcctcattctcatacta 8167079  T
Q  202 aacctcatcttaagtttgaggtatt 226  Q
    |||||||||||||||||||||||||    
T  8167078 aacctcatcttaagtttgaggtatt 8167054  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 50381543 - 50381464
Alignment:
Q  124 ttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaagaactcctcattctcatactaaa 203  Q
    |||||||||||||  | |||||||||  |  | ||| ||||||||||||| || |||||||||| |||||||||||||||    
T  50381543 ttggaataaaaaactattatatcaatggtcaagattcaactttcccatcaaggaaaagaactccccattctcatactaaa 50381464  T

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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 36058486 - 36058662
Alignment:
Q  7 ccaacaattcaaacaaaataaaataatattgtttaatctgcaggtggggccgctgcttttggtgtaccgtgtgcgagcaaaaaattaaaccaagttgcag 106  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||| ||||| |||     
T  36058486 ccaacacttcaaacaaaataaaataataatatttaatctgcaggtggggccgctgtttttggtgtaccatgtgctagcaaaaagttaaaacaagtagcaa 36058585  T
Q  107 gtgataaatctaaactgttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaagaa 183  Q
     | ||| |||| ||||||| |||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  36058586 ataatagatctgaactgtttgaataaaaaatcaatatatcaatggtccatattaaactttcccatcatggaaaagaa 36058662  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 3140459 - 3140635
Alignment:
Q  7 ccaacaattcaaacaaaataaaataatattgtttaatctgcaggtggggccgctgcttttggtgtaccgtgtgcgagcaaaaaattaaaccaagttgcag 106  Q
    |||||| |||| ||||||| |||||||||| ||||||||| |||||||  |||||||||||||||||| ||||| |||||||| ||||| | | | ||||    
T  3140459 ccaacacttcacacaaaatgaaataatattatttaatctgtaggtgggttcgctgcttttggtgtaccatgtgccagcaaaaagttaaaaccaatagcag 3140558  T
Q  107 gtgataaatctaaactgttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaagaa 183  Q
    || ||| |||| |||  || |||||||||||||||||||||||  | ||||||||| ||| |||| |||| ||||||    
T  3140559 gtaatagatctgaaccatttgaataaaaaatcaatatatcaatggtccatattaaatttttccatgatggaaaagaa 3140635  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 29412878 - 29412929
Alignment:
Q  157 attaaactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    ||||||||||| ||||||||||||||||| | ||||| |||| |||||||||    
T  29412878 attaaactttctcatcatgggaaagaacttcccattcccatattaaacctca 29412929  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 5747970 - 5747926
Alignment:
Q  161 aactttcccatcatgggaaagaactcctcattctcatactaaacc 205  Q
    ||||||||||| | ||||||||||||||| ||| |||||||||||    
T  5747970 aactttcccatgaagggaaagaactcctctttcccatactaaacc 5747926  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1461889 - 1462071
Alignment:
Q  1 aaaagcccaacaattcaaacaaaataaaataatattgtttaatctgcaggtggggccgctgcttttggtgtaccgtgtgcgagcaaaaaattaaaccaag 100  Q
    ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||||||| || |||||||||||| ||||| |||||||| ||||| ||||    
T  1461889 aaaagtccaacacttcaaacaaaatgaaataataatatttaatctgcaggtggggccgttgtttttggtgtaccatgtgctagcaaaaagttaaaacaag 1461988  T
Q  101 ttgcaggtgataaatctaaactgttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaagaa 183  Q
    | ||| || ||| |||| |||  || |||||||||||||||||||||||  | | ||||||||||||||||||||||||||||    
T  1461989 tagcaagtaatagatctgaaccatttgaataaaaaatcaatatatcaatggtccgtattaaactttcccatcatgggaaagaa 1462071  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 34681902 - 34682075
Alignment:
Q  7 ccaacaattcaaacaaaataaaataatattgtttaatctgcaggtggggccgctgcttttggtgtaccgtgtgcgagcaaaaaattaaaccaagttgcag 106  Q
    |||||| |||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||| ||||| |||     
T  34681902 ccaacacttcaaacaaaatgaaataataatatttaatctgcaggtggggccgctgtttttggtgtaccatgtgccagcaaaaagttaaaacaagtagcaa 34682001  T
Q  107 gtgataaatctaaactgttggaataaaaaatcaatatatcaattattcatattaaactttcccatcatgggaaa 180  Q
    || ||| |||  |||  || |||||||||||||||||||||||  | ||||||||||||||||||||| |||||    
T  34682002 gtaatagatcagaaccatttgaataaaaaatcaatatatcaatggtccatattaaactttcccatcataggaaa 34682075  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 43972085 - 43972132
Alignment:
Q  161 aactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    |||||||||||  ||||||| |||| ||||||||||||||||||||||    
T  43972085 aactttcccatagtgggaaacaacttctcattctcatactaaacctca 43972132  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 13390012 - 13389961
Alignment:
Q  157 attaaactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  13390012 attaaactttcccatcatgagaaagaacttctcattctcatgctaaacctca 13389961  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 43014631 - 43014579
Alignment:
Q  156 tattaaactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    |||||||||||||||||||| |||||||||  || ||| ||||||||||||||    
T  43014631 tattaaactttcccatcatgagaaagaacttttctttcccatactaaacctca 43014579  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 72132 - 72081
Alignment:
Q  157 attaaactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    |||||||||||||||||||| ||||||||   ||||||||| ||||||||||    
T  72132 attaaactttcccatcatggaaaagaactttccattctcatgctaaacctca 72081  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 52523961 - 52523989
Alignment:
Q  157 attaaactttcccatcatgggaaagaact 185  Q
    |||||||||||||||||||||||||||||    
T  52523961 attaaactttcccatcatgggaaagaact 52523989  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 54006778 - 54006730
Alignment:
Q  160 aaactttcccatcatgggaaagaactcctcattctcatactaaacctca 208  Q
    |||||||||||| |||||||| |||| | ||||| ||||||||||||||    
T  54006778 aaactttcccatgatgggaaacaacttcccattcccatactaaacctca 54006730  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 54089227 - 54089271
Alignment:
Q  161 aactttcccatcatgggaaagaactcctcattctcatactaaacc 205  Q
    |||||||||||||| ||||| ||||  ||||||||||||||||||    
T  54089227 aactttcccatcataggaaaaaactattcattctcatactaaacc 54089271  T

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